>retro_ocun_973
AAATATCACGCAGTGGCTGTGCTGCTCCACGCCATCTGTGCCTTGAAGGGGCTTTGGTTCGAAGGCAGGCACAGGAGCAG
AGTCTGCAGAGCCTGGTCTCTCAGTACTTGCAGATCATAACCAACTACGGCAAGGACCTGATGGAAAAGGCCAAGGCCCC
TGAGCTCAGGCCCAGGCCAAGGCCTACTTTGAAAAGACACAAGAGCAGCTGACGCCCTTGGTCAAGAAGGCTGGAACTGA
TCTGTTTAACTTCTTGAGCAATTTCATGGATCTCAAAACACAGCCTGCTGCCCCG
ORF - retro_ocun_973 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
87.13 % |
Parental protein coverage: |
99. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | KLLAMTVLLLTICSL-EGALVRRQAEEQSLQSLVSQYLQTVTNYSKDLMEKAKAPEL-QAQAKAYFEKTQ |
| K..A..VLL..IC.L.EGALVRRQA.EQSLQSLVSQYLQ..TNY.KDLMEKAKAPEL.QAQAKAYFEKTQ |
Retrocopy | KYHAVAVLLHAICAL<EGALVRRQAQEQSLQSLVSQYLQIITNYGKDLMEKAKAPEL<QAQAKAYFEKTQ |
|
Parental | EQLTPLVKKAGTDLFNFLSNFMDLKTQPAAP |
| EQLTPLVKKAGTDLFNFLSNFMDLKTQPAAP |
Retrocopy | EQLTPLVKKAGTDLFNFLSNFMDLKTQPAAP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .06 RPM |
89 .24 RPM |
SRP017611_kidney |
0 .20 RPM |
1 .62 RPM |
SRP017611_liver |
0 .15 RPM |
37 .07 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_973 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_973 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_973 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.