RetrogeneDB ID:

retro_olat_17

Retrocopy
location
Organism:Medaka (Oryzias latipes)
Coordinates:24:11811604..11817409(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSORLG00000015742
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:vmhc (1 of 2)
Ensembl ID:ENSORLG00000013217
Aliases:None
Description:ventricular myosin heavy chain [Source:ZFIN;Acc:ZDB-GENE-991123-5]


Retrocopy-Parental alignment summary:






>retro_olat_17
ATGGGCGATGCACTGATGGCTGAATTTGGAAAGGCTGCTCCTTTTCTGAGGAAGTCAGACAGGGAGCGTTTGGAGGCTCA
GACCAAGCCTTTTGACATCAAAACGGAATGCTTTGTCGTCGATGATAAGGTGGAATTCATGAAAGGACAGATCCAGAGCA
AAGATGGAGGGATGGTGACTGTGAAAAAGGAGGATGGAAACACTGTGACTGTGAAAGAGTCAGACGTTCATCCCCAGAAC
CCGCCAAAGTTTGATAAGATTGAAGACATGGCAATGTTTACTTTCCTACATGAACCAGCCGTGCTGTTTAACCTCAAAGA
GCGTTATGCTGCCTGGATGATCTACACCTATTCTGGGTTGTTCTGCGTCACTGTCAATCCATACAAATGGCTGCCTGTCT
ACGACTACGATGTGGTGGCCGCCTACAGAGGAAAGAAAAGGAGTGAGGCCCCTCCACACATCTTTTCCATCTCTGATAAT
GCTTACCAGTACATGCTGACAGACAGGGAGAACCAGTCCGTCCTCATCACCGGAGAATCCGGAGCAGGGAAGACGGTGAA
CACCAAGCGAGTCATCCAGTATTTTGCGAGCATCGCTGCAGTGGGAGGTGCAGGAAAAAAAGATAGCAGCAAGGGTACAT
TGGAGGATCAAATCATTCAGGCAAACCCTGCACTTGAGGCCTTTGGGAATGCCAAAACGGCGAGAAATGACAACTCTTCT
CGTTTTGGTAAATTCATCCGTATTCATTTTGGCACAAGTGGCAAACTGTCATCTGCCGACATTGAAACATACCTGCTGGA
GAAGTCCCGTGTCACCTTTCAGCTCAAGGCTGAAAGGAATTATCACATCTTCTACCAGATCCTGTCCAATCAAAAGCCAG
AGCTGCTGGACCTGCTGCTCATAACAAACAACCCATACGACTATTCCTACATCTCCCAAGGAGAGGTAACTGTTGCCTCC
ATCAATGACTCGGAGGAGCTGATGGCCACTGACAGTGCCTTTGATGTCCTTGGCTTCACTCAAGAGGAGAAAATGGGTGT
CTACAAGTTGACCGGTGCCATAATGCACTACGGCAACATGAAGTTCAAACAGAAGCAGCGGGAGGAGCAGGCTGAACCTG
ACGGCACAGAGGCTGCTGATAAATCAGCTTACCTAATGGGGCTGAACTCTGCAGACCTCATTAAAGGACTCTGTCATCCC
AGAGTTAAGGTTGGAAATGAATACGTCACCAAAGGCCAAGGTGTAGATCAAGTCTACTACGCCATTGGCGCTCTGGCAAA
ATCAGTGTATGAGAAAATGTTTAACTGGATGGTGGTTAGAATTAACCAGTCCCTTGACACCAAGCAGGATCGTCAATACT
TCATAGGAGTTCTTGACATTGCTGGATTTGAGATTTTTGATTTCAACACCTTTGAGCAGCTGTGCATCAACTACACCAAT
GAGAAACTGCAACAGTTTTTCAACCATCATATGTTTGTTTTGGAGCAAGAAGAATACAAAAAAGAAGGAATTGAATGGGA
ATTCATTGACTTTGGGATGGACCTGCAGGCCTGTATTGACCTGATTGAGAAGCCTATGGGGATTTTGTCCATCCTTGAGG
AGGAATGTATGTTTCCAAAGGCCAGTGACCAGACCTTTAAGGCAAAGCTCTACGATAATCATCTGGGCAAGAACAAGATG
TTTGAGAAGCCTAGGGCAGCAAAGGGGAAGGCAGAAGCTCATTTTGCTCTTGTTCACTATGCAGGCACGGTAGATTACAA
CATTAGTGGCTGGCTGGTCAAAAACAAAGACCCCTTAAACGAAACCGTGGTTGGGCTCTACCAGAAATCCTCCCTGAAGC
TGCTAAGTGTTTTGTTTTCTAATTATTCAGGAACGGATGGTGGAGATAAAGGAGGTAGCAAGGGGGCAAAAAAGAAAGGG
TCATCATTTCAGACAGTATCTGCCCTTCACAGGGAAAACCTGAACAAGCTCATGACCAATCTTAAAACCACTCATCCCCA
CTTTGTCCGTTGTCTAATTCCCAATGAGAAGAAAATTCCAGGGGTCATGGATAATTGCCTTGTAATGCACCAACTGCGCT
GTAATGGTGTACTGGAAGGCATCAGGATCTGCAGGAAAGGTTTCCCAAACAGGGTACTCTATGGAGACTTTAAGCAACGC
TACAGGATACTGAATGCCTCTGCAATCCCAGAAGGTCAGTTCATTGACTGCAAGAAAAGTGCTGAGAAGTTACTCGGATC
ACTGAGCATTGATCATACTCAGTACAAGTTTGGCCACACTAAAGTTTTCTTTAAAGCAGGACTGCTAGGAACCCTGGAGG
AAATGAGAGATGAGCAACTCTCTCGCATCATTACAAGGATCCAGGCAAATGCAAGAAGACTCCTCATGAGGGAGCAGTTT
GTGAAACTTGTGGAACGTCGAGATGCCCTGATGGTCATACAGTGGAATCTCCGGTCTTTTCTTGGTGTGAAAAACTGGCC
GTGGATGAAGCTCTTTTTCAAGATCAAACCCCTGCTTAAAAGTGCCGAATCTGAAAAGGAGATGGCCAACATGAAAGATG
AATTCAACAAGTTGAAAGAAGCAATGGAGAAATCTGAAACAAGGAGGAAAGAGCTAGAAGAGAAAATAGTGACTCTTCTC
CAAGAAAAGAATGATCTGACTCTGCAAATTCAATCTGAGCAGGACACTCTGACAGATGCTGAGGAACGCTGTGAACAGCT
GATTAAGAGCAAGATTCAACTGGAGGCCAAACTAAAAGAGATGAACGAGAGGTTGGAGGATGAGGAGGAGCTGAATGCAG
ATCTCACAGCAAAGAAACGCAAACTTGAAGATGAATGTTCTGAACTAAAGAAAGATATTGATGACCTTGAGTTAACGCTA
GCAAAAGTGGAAAAAGAGAAACACGCCACAGAGAACAAAGTAAAAAACCTAGTAGAAGAGATAGCTTCTCAAGATGAAAA
CATCTTGAAGCTGACCAAAGAGAAAAAGGCTCTGCAGGAGGCCCATCAGCAGACACTGGATGACCTCCAGAGTGAAGAGG
ACAAAGCCAACAGCCTTACCAAAGCAAAAGCTAAACTGGAGCAGCAAGTGGATGATCTAGAGGGATCACTTGAGCAAGAG
AAGAAAGTCAGAATGGATCTTGAACGCTCAAAGAGAAAGTTGGAGGGGGATCTGAAACTAACTCAAGAAAATATGATGGA
CCTGGAGAATGACAAGCAGCAGCTAGAAGAAAAACTCAAGAAGAAAGACTTTGAGATCTCTCAAGTAAACTCAAAACTAG
AAGACGAGCAAACCAATTCAGTTCAGCTGCAAAAGAAGCTGAAAGAAAGTCAGGCAAAAATTGAGGAGCTTGAAGAAGAG
TTGGATGCAGAACGTGCAGCGCGAGCAAAAGTGGAGAAGCAGCGCTCAGAATTGTCCCGTGAGCTGGAGGACATCAGTGA
ACGTTTGGAGGAAGTTGGCGGAGCCACATCAGCTCAAGTGGAGCTAAATAAAAAGAGAGATGCTGAGTTTCAGAAGCTGC
GAAGGGAGTTTGAAGAGTCAACTCTCCAACACGAGGCCACTGCTGCCGCCCTAAGAAAGAAGCATGCTGACAGTGTTGCT
GAACTGGGGGAACACATTGATAATCTGCAGCGTGTCAAGCAGAAACTGGAAAAAGAAAAGAATGAGCTCAAGCTGGAGCT
GGATGACTTGTCTTCAAGCATGGAGAGTGTTGTCAAGTCCAAAGCCAACATTGAAAAGATGTGTCGTACATTAGAAGACA
ATATGAATGAGTATAAATGTAAATTTGAGGAGGCTCAAAGGACCATCAACGACTTAACCACCCAAAGGGCTAGATTACTT
ACTGAAAATGGAGAGTTTGGACGTCAGCTAGAGGAGAAGGAAAGTCTCATATCACAGCTAACCAGAGGAAAAAACTCCTA
CAACCAGCAGGTGGAAGATCTGCGGAGACAGTTGGAGGAAGAAGTAAAGGCAAAGAATGCCCTTGCCCATGCTGTTCAGT
CAGCTCGACATGACTGCGATCTACTCCGAGAACAGTTCGAAGAGGAGCAGGAAGCCAAAGCTGAGCTACAGAGAGCCCTG
TCCAAATCCAACACGGAAGTTGCGGCATGGAGGACTAAATACGAGACGGATGGAATCCAAAGAACAGAAGAGCTGGAGGA
AGCGAAAAAGAAGCTGGTCCAGAGGTTGCAAGAGGCAGAGGAGGCCATTGAGGCAGTGAATGCAAAGTGTTCATCGCTAG
AGAAGACCAAACATCGCCTTCAAAATGAGATTGAAGATCTCATGTTGGATCTGGAAAGGTCAAATGCAGCATCAGCAGCA
CTGGACAAAAAGCAAAGAACCTTTGACAAAGTCCTGGCAGAGTGGAAGCAGAAGTTTGAAGAGTCACAGTCTGAATTGGA
GGCCTCACAGAAGGAGAGTCGTTCTCTAAGCACTGAACTCTTCAAACTTAAGAATGCCTTTGAGGAGTCACTGGATCAAC
TTGAAACAATTAAAAGAGAGAACAAGAACCTCCAGGAGGAAATCTCTGACCTCACTGATCAGCTTGGAGAAGGTGGCCGC
AGTGCCCATGAGCTAGAAAAGATCAGAAAGCAGCTTGAACAAGAAAAGAACGAGCTCCAATCAGCTCTTGAGGAGGCAGA
AGGATCTCTGGAGCATGAAGAAAGCAAGATCCTCAGAGCCCAGCTTGAATTCAACCAAGTAAAGGCTGAGATAGAGCGCA
AGCTAGCAGAGAAGGATGAGGAAATGGAGCAAGCCAAGAGAAACTACCAACGGATGCTTGAGTCGCTTCAATCCTCTTTG
GATTCTGAGACCAGGAGTCGAAATGAGGCCCTGAGAGTCAAGAAGAAGATGGAGGGTGACCTCAATGAGATGGAGATACA
GCTAAATCAAGCAAACAGGCAGGCAGCCGATGCCCAGAAGCAGGTCAAGACCCTCCAGGGGTTCCTTAAAGACGCACAGC
TACAGCTTGATGATACCCAGCACTCCAATGATGACTTAAGAGAAAACATCACTCTACTGGAACGCCGAAACAACTTGATC
CAGAGTGAGTTGGAGGAGCTGAGAGCCGCTCTTGAGCAGACAGAGAGAAGTCGGAAACTGGCCGAGCAGGAACTGACTGA
TGCAACAGAGAGGATCCAGCTGCTGCACTCCCAAAACACCAGCCTGATTAACCAGAAAAAGAAGCATGAAGCAGATCTGC
TCAACCTGCAGAATGAGATAGAGGAGATCATACAGGAGCACCGCAATGCAGAGGAGAAGGCAAAGAAGGCAATTACGGAT
GCAGCCATGATGGCAGAGGAGCTAAAGAAGGAGCAGGACACCAGTGCACACTTGGAGCGCATGAAAAAGAACATGGAACA
GACAATCAAAGACCTGCAACACCGTCTCGATGAGGCAGAACAGATCGCCATGAAAGGTGGTAAGAAGCAGGTCCAGAAAC
TGGAAGCTCGTATTCGGGAGCTGGAGAATGAACTGGATGCAGAGCAGAAGAGGGGAACCGAGTCCATTAAAGGAGTGCGG
AAATATGAACGTAGGATTAAAGAGCTCACCTACCAGACCGAGGAGGACCGCAAGAACCTGGCACGCCTGCAAGACCTTGT
CGACAAGCTGCAATTGAAGGTGAAGTCCTACAAGCATGCAGCTGATGAAGCAGAGGAGGCAGCCAATGCCAACATGGCCA
AGGTCCGTAAGCTGCAGCATGAGCTAGAGGAGGCAGAGGAGAGGGCAGATATTGCCGAAGCACAAGTTAATAAGCTGAGG
GCCAAGACCAGAGACGGATCCTCCAAGAAGAACATGGACGAGTAA

ORF - retro_olat_17 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.94 %
Parental protein coverage: 99.79 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMGDAAMKEFGAAAPYLRKSDRERLEAQTRPFDMKRECFVPDPEEEYVKASIVSREGDKVTAQTAKGKTVT
MGDA.M.EFG.AAP.LRKSDRERLEAQT.PFD.K.ECFV.D...E..K..I.S..G..VT.....G.TVT
RetrocopyMGDALMAEFGKAAPFLRKSDRERLEAQTKPFDIKTECFVVDDKVEFMKGQIQSKDGGMVTVKKEDGNTVT
ParentalVKECDVHPQNPPKFDKIEDMAMFTFLHEPAVLFNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNQEVVV
VKE.DVHPQNPPKFDKIEDMAMFTFLHEPAVLFNLKERYAAWMIYTYSGLFCVTVNPYKWLPVY...VV.
RetrocopyVKESDVHPQNPPKFDKIEDMAMFTFLHEPAVLFNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYDYDVVA
ParentalAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFASIAA--GGGKKDAG
AYRGKKRSEAPPHIFSISDNAYQYMLTDRENQS.LITGESGAGKTVNTKRVIQYFASIAA..G.GKKD..
RetrocopyAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSVLITGESGAGKTVNTKRVIQYFASIAAVGGAGKKDSS
ParentalTEKKGTLEDQIIQCNPALEAFGNAKTIRNDNSSRFGKFIRIHFAASGKLASADIETYLLEKSRVTFQLRA
...KGTLEDQIIQ.NPALEAFGNAKT.RNDNSSRFGKFIRIHF..SGKL.SADIETYLLEKSRVTFQL.A
Retrocopy---KGTLEDQIIQANPALEAFGNAKTARNDNSSRFGKFIRIHFGTSGKLSSADIETYLLEKSRVTFQLKA
ParentalERDYHIFYQILSQKKPELLEMLLITNNPYDYAFISQGETTVASINDAEELLATDEAFDVLGFTQDEKNGI
ER.YHIFYQILS..KPELL..LLITNNPYDY..ISQGE.TVASIND.EEL.ATD.AFDVLGFTQ.EK.G.
RetrocopyERNYHIFYQILSNQKPELLDLLLITNNPYDYSYISQGEVTVASINDSEELMATDSAFDVLGFTQEEKMGV
ParentalYKLIGAIMHFGNMKFKNKQREEQAEADGTEDADKVAYLMGLNSADLIKGLCHPRVKVGNEWVTKGQNVQQ
YKL.GAIMH.GNMKFK.KQREEQAE.DGTE.ADK.AYLMGLNSADLIKGLCHPRVKVGNE.VTKGQ.V.Q
RetrocopyYKLTGAIMHYGNMKFKQKQREEQAEPDGTEAADKSAYLMGLNSADLIKGLCHPRVKVGNEYVTKGQGVDQ
ParentalVYYAVGALSKSVYEKMFLWMVVRINHSLDTKQPRQYFIGVLDIAGFEIFDFNTFEQLCINFTNEKLQQFF
VYYA.GAL.KSVYEKMF.WMVVRIN.SLDTKQ.RQYFIGVLDIAGFEIFDFNTFEQLCIN.TNEKLQQFF
RetrocopyVYYAIGALAKSVYEKMFNWMVVRINQSLDTKQDRQYFIGVLDIAGFEIFDFNTFEQLCINYTNEKLQQFF
ParentalNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEKPMGIMSILEEECMFPKASDATFKAKLYDNHLGK
NHHMFVLEQEEYKKEGIEW.FIDFGMDLQACIDLIEKPMGI.SILEEECMFPKASD.TFKAKLYDNHLGK
RetrocopyNHHMFVLEQEEYKKEGIEWEFIDFGMDLQACIDLIEKPMGILSILEEECMFPKASDQTFKAKLYDNHLGK
ParentalSSNFQKPRNVKGKPEAHFALVHYAGTVDYNINNWLVKNKDPLNETVVGLFQKSTLKLLANLFANYAGVDS
...F.KPR..KGK.EAHFALVHYAGTVDYNI..WLVKNKDPLNETVVGL.QKS.LKLL..LF.NY.G.D.
RetrocopyNKMFEKPRAAKGKAEAHFALVHYAGTVDYNISGWLVKNKDPLNETVVGLYQKSSLKLLSVLFSNYSGTDG
ParentalAETGKSGKGGGSKKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMENPLVMHQLRC
...G.S....G.KKKGSSFQTVSALHRENLNKLMTNL..THPHFVRC.IPNE.K.PG.M.N.LVMHQLRC
RetrocopyGDKGGSK---GAKKKGSSFQTVSALHRENLNKLMTNLKTTHPHFVRCLIPNEKKIPGVMDNCLVMHQLRC
ParentalNGVLEGIRICRKGFPNRILYGDFKQRYRILNPAAIPEGQFIDSRKGAEKLLGSLEIDHNQYKFGHTKVFF
NGVLEGIRICRKGFPNR.LYGDFKQRYRILN..AIPEGQFID..K.AEKLLGSL.IDH.QYKFGHTKVFF
RetrocopyNGVLEGIRICRKGFPNRVLYGDFKQRYRILNASAIPEGQFIDCKKSAEKLLGSLSIDHTQYKFGHTKVFF
ParentalKAGLLGQLEEMRDDRLSLIITGIQARSRGLLARVEFQKIVERRDALLVIQWNIRAFMGVKNWPWMKLYFK
KAGLLG.LEEMRD..LS.IIT.IQA..R.LL.R..F.K.VERRDAL.VIQWN.R.F.GVKNWPWMKL.FK
RetrocopyKAGLLGTLEEMRDEQLSRIITRIQANARRLLMREQFVKLVERRDALMVIQWNLRSFLGVKNWPWMKLFFK
ParentalIKPLLRSAEAEKEMANMKEEFLKLKEAYAKSEARRKELEEKMVSLLQEKNDLQLQVHAEQDNLADAEERC
IKPLL.SAE.EKEMANMK.EF.KLKEA..KSE.RRKELEEK.V.LLQEKNDL.LQ...EQD.L.DAEERC
RetrocopyIKPLLKSAESEKEMANMKDEFNKLKEAMEKSETRRKELEEKIVTLLQEKNDLTLQIQSEQDTLTDAEERC
ParentalEGLIKHKIQAEAKVKELTERLEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKV
E.LIK.KIQ.EAK.KE..ERLEDEEE.NA.LTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKV
RetrocopyEQLIKSKIQLEAKLKEMNERLEDEEELNADLTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKV
ParentalKNLVEEMAALDEIIAKLTKEKKALQEAHQQTLDDLQSEEDKVNTLTKAKAKLEQQVDDLEGSLEQEKKVR
KNLVEE.A..DE.I.KLTKEKKALQEAHQQTLDDLQSEEDK.N.LTKAKAKLEQQVDDLEGSLEQEKKVR
RetrocopyKNLVEEIASQDENILKLTKEKKALQEAHQQTLDDLQSEEDKANSLTKAKAKLEQQVDDLEGSLEQEKKVR
ParentalMDLERAKRKLEGDLKLTLESLMDLENDKQQLEEHLKKKDFELSQLNNKIEDEQAISIQLQKKLKELQARI
MDLER.KRKLEGDLKLT.E..MDLENDKQQLEE.LKKKDFE.SQ.N.K.EDEQ..S.QLQKKLKE.QA.I
RetrocopyMDLERSKRKLEGDLKLTQENMMDLENDKQQLEEKLKKKDFEISQVNSKLEDEQTNSVQLQKKLKESQAKI
ParentalEELEEELEAERAARAKVEKQRADLARELEEISERLEEAGGATTTQIEMNKKREAEFQKLRRDLEEATLHH
EELEEEL.AERAARAKVEKQR..L.RELE.ISERLEE.GGAT..Q.E.NKKR.AEFQKLRR..EE.TL.H
RetrocopyEELEEELDAERAARAKVEKQRSELSRELEDISERLEEVGGATSAQVELNKKRDAEFQKLRREFEESTLQH
ParentalESTTASLRKKQADSVADLGEQIDNLQRVKQKLEKEKSELKLELDDVVSNMEHVVKTKTNLEKTCRTLEDQ
E.T.A.LRKK.ADSVA.LGE.IDNLQRVKQKLEKEK.ELKLELDD..S.ME.VVK.K.N.EK.CRTLED.
RetrocopyEATAAALRKKHADSVAELGEHIDNLQRVKQKLEKEKNELKLELDDLSSSMESVVKSKANIEKMCRTLEDN
ParentalMNEYKNKFEEAQRCINDFNMQKAKLQTENGELSRQLEDKDSKVSQLTRGKMSYTQQIEDLKRQLEEESKA
MNEYK.KFEEAQR.IND...Q.A.L.TENGE..RQLE.K.S..SQLTRGK.SY.QQ.EDL.RQLEEE.KA
RetrocopyMNEYKCKFEEAQRTINDLTTQRARLLTENGEFGRQLEEKESLISQLTRGKNSYNQQVEDLRRQLEEEVKA
ParentalKNALAHAVQSARHDCDLLREQYEEEQEAKAELQRSMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQ
KNALAHAVQSARHDCDLLREQ.EEEQEAKAELQR..SK.N.EVA.WRTKYETD.IQRTEELEEAKKKL.Q
RetrocopyKNALAHAVQSARHDCDLLREQFEEEQEAKAELQRALSKSNTEVAAWRTKYETDGIQRTEELEEAKKKLVQ
ParentalRLQEAEEAVEAVNAKCSSLEKTKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKVLSEWKQKYEESQC
RLQEAEEA.EAVNAKCSSLEKTKHRLQNEIEDLM.D.ERSNAA.AALDKKQR.FDKVL.EWKQK.EESQ.
RetrocopyRLQEAEEAIEAVNAKCSSLEKTKHRLQNEIEDLMLDLERSNAASAALDKKQRTFDKVLAEWKQKFEESQS
ParentalELESSQKDGRALSTELFKLKNSYEESLDHLETMRRENKNLQEEVSDLTEQLGESSKNIHELEKLRKQLEQ
ELE.SQK..R.LSTELFKLKN..EESLD.LET..RENKNLQEE.SDLT.QLGE.....HELEK.RKQLEQ
RetrocopyELEASQKESRSLSTELFKLKNAFEESLDQLETIKRENKNLQEEISDLTDQLGEGGRSAHELEKIRKQLEQ
ParentalEKSEIQSALEEAEASLEHEEGKILRTQLEFNQIKAEIERKLAEKDEEMEQSKRNMQRTIDTLQSSLEAEC
EK.E.QSALEEAE.SLEHEE.KILR.QLEFNQ.KAEIERKLAEKDEEMEQ.KRN.QR....LQSSL..E.
RetrocopyEKNELQSALEEAEGSLEHEESKILRAQLEFNQVKAEIERKLAEKDEEMEQAKRNYQRMLESLQSSLDSET
ParentalRSRNEALRIKKKMEGDLNEMEIQLSQANRQAAEAQKQLKAVHAHLKDCQIQLDESVRANDDLKENLAIIE
RSRNEALR.KKKMEGDLNEMEIQL.QANRQAA.AQKQ.K.....LKD.Q.QLD.....NDDL.EN....E
RetrocopyRSRNEALRVKKKMEGDLNEMEIQLNQANRQAADAQKQVKTLQGFLKDAQLQLDDTQHSNDDLRENITLLE
ParentalRRNNLLQAELEELRAALEQTERSRKLAEQDLLDVSERVQLLHSQNTGLINQKKKLESDTVQLQTEVEDAV
RRNNL.Q.ELEELRAALEQTERSRKLAEQ.L.D..ER.QLLHSQNT.LINQKKK.E.D...LQ.E.E...
RetrocopyRRNNLIQSELEELRAALEQTERSRKLAEQELTDATERIQLLHSQNTSLINQKKKHEADLLNLQNEIEEII
ParentalQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAMKGGKKQVQKL
QE.RNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAMKGGKKQVQKL
RetrocopyQEHRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAMKGGKKQVQKL
ParentalEARVRDLENEVELEQKKSSDAVKGIRKYERRIKELTYQTEEDRKNTARLQDLVDKLQLKVKAYKRAAEEA
EAR.R.LENE...EQK......KG.RKYERRIKELTYQTEEDRKN.ARLQDLVDKLQLKVK.YK.AA.EA
RetrocopyEARIRELENELDAEQKRGTESIKGVRKYERRIKELTYQTEEDRKNLARLQDLVDKLQLKVKSYKHAADEA
ParentalEEQANTHLTKFRKLQHELDEAEERADIAESQVNKIRAKTRDVGSKSKL
EE.AN....K.RKLQHEL.EAEERADIAE.QVNK.RAKTRD..SK...
RetrocopyEEAANANMAKVRKLQHELEEAEERADIAEAQVNKLRAKTRDGSSKKNM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Oryzias latipes was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Oryzias latipes was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_olat_17 retrocopy.

TSS - click to see more details

Oryzias latipes was not studied using FANTOM5 data.

Lab - click to see more details

retro_olat_17 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_olat_17 has 0 orthologous retrocopies within teleost group .

Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Gadus morhua ENSGMOG000000093871 retrocopy
retro_gmor_5,
Oryzias latipes ENSORLG00000013217 1 retrocopy
retro_olat_17 ,


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