>retro_omer_23
ATGGAGATCTCGGCGGCGGCGGCGGCGCCCAATGGCGGCGCGGCGGCGGCGGAGCAGCAGCAGCGGCGTCGGCTGCCGGA
CTTCCAGCAGTCGGTGAGGCTCAAGTACGTGAAGCTGGGGTACCACTACCTCATCTCCCACGGCATGTACCTGCTGCTGT
CGCCGCTGATGGCGCTGGTGGCCGTGCAGCTCTCCACCGTGTCCCCGGGCGACATCGCCGACCTGTGGGAGCAGCTCCGC
TTCAACCTCCTCTCCGTCGTCGCCTGCTCCACCCTCCTCGTCTTCCTCTCCACCCTCTACTTCCTCACCCGCCCCCGCCC
CGTCTACCTCCTCGACTTCGCCTGCTACAAGCCCGACCCCCAGCGCAAGTGCACCCGCGAGACCTTCATGCGCTGCTCCA
GCCTCACCGGCTCCTTCACCGACGCCAACCTCGACTTCCAGCGCAAGATCCTCGAGCGCTCGGGCCTCGGCGAGGACACC
TACCTCCCTCCCGCCGTGCTGCGCGTCCCGCCCAACCCCTGCATGGACGAGGCCCGCAAGGAGGCCCGCGCCGTCATGTT
CGGCGCCATTGACCAGCTTCTTGAGAAGACGGGTGTGAAGCCTAAGGACATTGGTGTGGTTGTCGTCAATTGCAGCTTGT
TCAACCCGACGCCGTCGCTGTCCGCCATGGTTGTGAACCACTACAAGCTGAGGGGGAATGTCATCAGCTACAACCTCGGC
GGGATGGGGTGCAGCGCCGGCTTGCTGTCCGTCGATCTCGCCAAGGACTTGCTGCAGGTGCACCCCAACTCGTACGCGCT
GGTGGTCAGCATGGAGAACATCACGCTCAATTGGTACTTTGGCAACAACCGGTCGATGCTCGTGTCGAATTGCCTGTTCC
GGATGGGCGGCGCCGCCATCCTGCTGTCGAACAGGCGGTCCGACCGCCGCAGGTCCAAGTATGAGCTTGTGCACACCGTG
CGCACGCACAAGGGCGCCAACGACAAGTGCTTTGGCTGTGTCACACAGGAGGAAGACGAGATCGGCAAGATCGGCGTGTC
GCTCTCCAAGGACCTGATGGCGGTGGCCGGAGACGCGCTGAAGACGAACATCACCACCCTCGGGCCGCTCGTGCTCCCGT
TGTCGGAGCAGCTGCTCTTCATGGCCACATTGGTTGCCAAGAAGGTCCTCAAGATGAAGATCAAGCCATACATCCCCGAT
TTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTTGGAGTT
GACTGACTGGCACATGGAGCCATCTAGGATGACCCTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGC
TGGCGTACACCGAGGCGAAGGGGAGGATCAGGAAGCGGGACAGGATCTGGCAGATTGCATTTGGATCTGGTTTCAAGTGC
AACAGCGCAGTCTGGAAGGCACTGCGAACAGTGAACCCGGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTT
CCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGA
ORF - retro_omer_23 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
81.36 % |
Parental protein coverage: |
98.28 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | AANDGAGAAGGERRRRLPDFQQSQSVRLKYVKLGYHYLITNGVYLLLTPLIALVAVHLSTLTAGDVAGLW |
| A.N.GA.AA....RRRLPDFQQS..VRLKYVKLGYHYLI..G.YLLL.PL.ALVAV.LST...GD.A.LW |
Retrocopy | APNGGAAAAEQQQRRRLPDFQQS--VRLKYVKLGYHYLISHGMYLLLSPLMALVAVQLSTVSPGDIADLW |
|
Parental | SHLRFNLVSVVACTTLLVLLSTVHFLTRPRPVYLVDFACYKPPPERRCSRDAFMRCSRLAGCFTAASLDF |
| ..LRFNL.SVVAC.TLLV.LST..FLTRPRPVYL.DFACYKP.P.R.C.R..FMRCS.L.G.FT.A.LDF |
Retrocopy | EQLRFNLLSVVACSTLLVFLSTLYFLTRPRPVYLLDFACYKPDPQRKCTRETFMRCSSLTGSFTDANLDF |
|
Parental | QRKIVERSGLGDDTYLPAAVLREPPNPSMAEARREAEAVMFGAVDDLLAKTGVSAKEIGVLVVNCSLFNP |
| QRKI.ERSGLG.DTYLP.AVLR.PPNP.M.EAR.EA.AVMFGA.D.LL.KTGV..K.IGV.VVNCSLFNP |
Retrocopy | QRKILERSGLGEDTYLPPAVLRVPPNPCMDEARKEARAVMFGAIDQLLEKTGVKPKDIGVVVVNCSLFNP |
|
Parental | TPSLSAMVVNHYKLRGNIVSYNLGGMGCSAGLLAIDLAKDLLQVHPSSYALVVSMENITLNWYSGNDRSM |
| TPSLSAMVVNHYKLRGN..SYNLGGMGCSAGLL..DLAKDLLQVHP.SYALVVSMENITLNWY.GN.RSM |
Retrocopy | TPSLSAMVVNHYKLRGNVISYNLGGMGCSAGLLSVDLAKDLLQVHPNSYALVVSMENITLNWYFGNNRSM |
|
Parental | LVSNCLFRMGGAAILLSNRWSERRRSKYELVHTVRTHKGGDDKCFGCVTQEEDGEGNVGVALSKDLMAVA |
| LVSNCLFRMGGAAILLSNR.S.RRRSKYELVHTVRTHKG..DKCFGCVTQEED..G..GV.LSKDLMAVA |
Retrocopy | LVSNCLFRMGGAAILLSNRRSDRRRSKYELVHTVRTHKGANDKCFGCVTQEEDEIGKIGVSLSKDLMAVA |
|
Parental | GDALKTNITTLGPLVLPLSEQLLFMATLVAKKLLKMKNVKPYIPDFKLAFEHFCVHAGGRAVLDEIEKNL |
| GDALKTNITTLGPLVLPLSEQLLFMATLVAKK.LKMK..KPYIPDFKLAFEHFC.HAGGRAVLDE.EKNL |
Retrocopy | GDALKTNITTLGPLVLPLSEQLLFMATLVAKKVLKMK-IKPYIPDFKLAFEHFCIHAGGRAVLDELEKNL |
|
Parental | SLGEWQMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRVRRRDRVWQIAFGSGFKCNSAVWRALRSVNPEE |
| .L..W.MEPSRMTLYRFGNTSSSSLWYELAY.EAKGR.R.RDR.WQIAFGSGFKCNSAVW.ALR.VNP.. |
Retrocopy | ELTDWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIRKRDRIWQIAFGSGFKCNSAVWKALRTVNPAK |
|
Parental | ESVKKNPWMDEIDRFPVVVPRVSRI |
| E...KNPWMDEID.FPV.VP..S.. |
Retrocopy | E---KNPWMDEIDNFPVEVPKISKV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Oryza meridionalis was not studied using RNA-Seq expression data.
Oryza meridionalis was not studied using ChIP-Seq data.
Oryza meridionalis was not studied using EST data.
Oryza meridionalis was not studied using FANTOM5 data.
retro_omer_23 was not experimentally validated.
Retrocopy orthology:
Oryza meridionalis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.