RetrogeneDB ID: retro_omer_27

Retrocopy location

• Organism: Oryza meridionalis
• Coordinates: 11:12982600..12982801(+)
• Located in intron of: OMERI11G10420

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: OMERI01G18000
• Aliases: None
• Description: None

Sequence

>retro_omer_27
AAATTCCAATCTCAGTTGTTGAGAGCAGTAGCCAGCAGCAGCATCGATTGGAGACTGGAGAGGGGTTGATGGCTAGGGTT
AGCTTGGAGATAGACTTATGAAGAGCCACGGGAACGATTCAGGCAGGCAGCGGCTGCGGGGCGGCTGCCGGAGGCAGGGA
GCAGCGGCCGGCGTGAGGAGGAGCAGCGGTGTGAGCGGCGG

Alignment

ORF - retro_omer_27 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.75 %
• Parental protein coverage: 55.83 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KIASSRSRRVAGSSTSRIRAKKKYLSFKTVHTHEEPRNRFRPAAAAGRLPEAGSSGGRGVERRRDLR
          K..S...R.VA.SS..........L......T.EEPR.RFR.AAAAGRLPEAGSSG.R..E.R...R
Retrocopy KFQSQLLRAVASSSIDWRLERG*WLGLAWR*TYEEPRERFRQAAAAGRLPEAGSSGRREEEQRCERR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Oryza meridionalis was not studied using RNA-Seq expression data.

ChIP-Seq

Oryza meridionalis was not studied using ChIP-Seq data.

EST

Oryza meridionalis was not studied using EST data.

TSS

Oryza meridionalis was not studied using FANTOM5 data.

Lab

retro_omer_27 was not experimentally validated.

Homology

Retrocopy orthology:

Oryza meridionalis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Oryza meridionalis	OMERI01G18000	1 retrocopy	retro_omer_27 ,