RetrogeneDB ID: retro_omer_3

Retrocopy location

• Organism: Oryza meridionalis
• Coordinates: 6:3460107..3460446(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: OMERI06G04360
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: OMERI07G19550
• Aliases: None
• Description: None

Sequence

>retro_omer_3
ATGGGGAAGAGGAAGTCTCGGGTGTCGAAGATGGTGGCGACGGCGAAGAAGGCGGCGCCGAAGCTGGAGACGGCGTTCAG
CTGCCCGTTCTGCGACCACGGCGGCGCGGTGGAGTGCAGCATCGACCTGCAGCACATGATCGCCGAGGCCTCCTGCTTCG
TCTGCCAGGCGCGCTACTCCACCACCGCCCACGCGCTCACCGAGCCCATCGACGTCTACAGCGAGTGGATCGACCAGTGC
GAGCTCGCCAAAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGACGACGACGACGACGACGAGCACCACCACCACAGCAA
GGCCAAGCGCCGCAGCTAA

Alignment

ORF - retro_omer_3 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.49 %
• Parental protein coverage: 87.64 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGKRK---SAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPI
          MGKRK...S......KK...KL.T.FSCPFC.HG..VEC.ID....I.EASC..CQ...STT..ALTEPI
Retrocopy MGKRKSRVSKMVATAKKAAPKLETAFSCPFCDHGGAVECSIDLQHMIAEASCFVCQARYSTTAHALTEPI

Parental  DIYSEWIDECE
          D.YSEWID.CE
Retrocopy DVYSEWIDQCE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Oryza meridionalis was not studied using RNA-Seq expression data.

ChIP-Seq

Oryza meridionalis was not studied using ChIP-Seq data.

EST

Oryza meridionalis was not studied using EST data.

TSS

Oryza meridionalis was not studied using FANTOM5 data.

Lab

retro_omer_3 was not experimentally validated.

Homology

Retrocopy orthology:

Oryza meridionalis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Oryza meridionalis	OMERI07G19550	1 retrocopy	retro_omer_3 ,