RetrogeneDB ID: | retro_omer_3 | ||
Retrocopy location | Organism: | Oryza meridionalis | |
| Coordinates: | 6:3460107..3460446(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | OMERI06G04360 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | OMERI07G19550 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_omer_3
ATGGGGAAGAGGAAGTCTCGGGTGTCGAAGATGGTGGCGACGGCGAAGAAGGCGGCGCCGAAGCTGGAGACGGCGTTCAG
CTGCCCGTTCTGCGACCACGGCGGCGCGGTGGAGTGCAGCATCGACCTGCAGCACATGATCGCCGAGGCCTCCTGCTTCG
TCTGCCAGGCGCGCTACTCCACCACCGCCCACGCGCTCACCGAGCCCATCGACGTCTACAGCGAGTGGATCGACCAGTGC
GAGCTCGCCAAAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGACGACGACGACGACGACGAGCACCACCACCACAGCAA
GGCCAAGCGCCGCAGCTAA
ORF - retro_omer_3 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 60.49 % |
| Parental protein coverage: | 87.64 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MGKRK---SAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPI |
| MGKRK...S......KK...KL.T.FSCPFC.HG..VEC.ID....I.EASC..CQ...STT..ALTEPI | |
| Retrocopy | MGKRKSRVSKMVATAKKAAPKLETAFSCPFCDHGGAVECSIDLQHMIAEASCFVCQARYSTTAHALTEPI |
| Parental | DIYSEWIDECE |
| D.YSEWID.CE | |
| Retrocopy | DVYSEWIDQCE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Oryza meridionalis was not studied using RNA-Seq expression data.
Oryza meridionalis was not studied using ChIP-Seq data.
Oryza meridionalis was not studied using EST data.
Oryza meridionalis was not studied using FANTOM5 data.
retro_omer_3 was not experimentally validated.
Retrocopy orthology:
Oryza meridionalis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Oryza meridionalis | OMERI07G19550 | 1 retrocopy |
retro_omer_3 ,
|