>retro_omer_32
ATCGGCGAGCACGAGCGCCGGTTCCGCGTGTTCTGGGACAACCTCAAGTTCGTCGACGCCCACAACGCCCGCGCCGACGA
GCGCGGCGGGTTCCGCCTCGGGATGAACCGCTTCGCCGACCTAACCAACGGCGAGTTCCGCGCCGCCTACCTCGGCACCA
CGCCCGCCGGCAGGGGGCGCCGCGTCGGGGAGGCGTACCGCCACGACGGCGTCGAGGCGCTGCCGGACTCCGTGGACTGG
AGGGACGAGGGCGCCGTCGTCGCCCCCGTCAAGAACCAGGGCCAGTGCGGCAGCTGCTGGGCGTTCTCGGCGGTCGCCGC
CGTGGAGGGCATCAACAAGATCGTCACCGGCGAGCTGGTGTCGCTGTCGGAGCAGGAGCTCGTGGAGTGCGCGAGGAACG
GGCAGAACAGCGGGTGCAACGGCGGGATCATGGACGACGCGTTCGCCTTCATCGCCCGGAACGGCGGCCTCGACACGGAG
GAGGACTACCCGTACACGGCCATGGACGGCAAGTGCAACCTCGCCAAGAGGAGCCGCAAGGTGGTGTCCATCGACGGCTT
CGAGGACGTGCCCGAGAACGACGAGCTGTCGCTCCAGAAGGCCGTGGCGCACCAGCCCGTCAGCGTCGCCATCGACGCCG
GCGGCCGCGAGTTCCAGCTCTACGACTCCGGCGTGTTCACCGGCCGGTGCGGCACCAACCTGGATCACGGCGTGGTGGCG
GTGGGGTACGGCACGGACGCCGCCACCGGCGCCGCCTACTGGACGGTGCGCAACTCGTGGGACCCCGACTGGGGCGAGAA
CGGCTACATCCGCATGGAGCGCAACGTCACCGCGCGCACCGGCAAGTGCGGCATCGCCATGATGGCGTCGTACCCGATCA
AGAAGGGGCCCAACCCG
ORF - retro_omer_32 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
77.59 % |
Parental protein coverage: |
63.79 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | LGEHERRFRIFWDNLRFVDAHNARADERGGFRLGMNRFADLTNEEFRATFLGAKVAERSRAAGERYRHDG |
| .GEHERRFR.FWDNL.FVDAHNARADERGGFRLGMNRFADLTN.EFRA..LG...A.R.R..GE.YRHDG |
Retrocopy | IGEHERRFRVFWDNLKFVDAHNARADERGGFRLGMNRFADLTNGEFRAAYLGTTPAGRGRRVGEAYRHDG |
|
Parental | VEELPESVDWREKGA-VAPVKNQGQCGSCWAFSAVSTVESINQLVTGEMITLSEQELVECSTNGQNSGCN |
| VE.LP.SVDWR..GA.VAPVKNQGQCGSCWAFSAV..VE.IN..VTGE...LSEQELVEC..NGQNSGCN |
Retrocopy | VEALPDSVDWRDEGAVVAPVKNQGQCGSCWAFSAVAAVEGINKIVTGELVSLSEQELVECARNGQNSGCN |
|
Parental | GGLMDDAFDFIIKNGGIDTEDDYPYKAVDGKCDINRENAKVVSIDGFEDVPQNDEKSLQKAVAHQPVSVA |
| GG.MDDAF.FI..NGG.DTE.DYPY.A.DGKC.......KVVSIDGFEDVP.NDE.SLQKAVAHQPVSVA |
Retrocopy | GGIMDDAFAFIARNGGLDTEEDYPYTAMDGKCNLAKRSRKVVSIDGFEDVPENDELSLQKAVAHQPVSVA |
|
Parental | IEAGGREFQLYHSGVFSGRCGTSLDHGVVAVGYGTD--NGKDYWIVRNSWGPKWGESGYVRMERNINVTT |
| I.AGGREFQLY.SGVF.GRCGT.LDHGVVAVGYGTD...G..YW.VRNSW.P.WGE.GY.RMERN....T |
Retrocopy | IDAGGREFQLYDSGVFTGRCGTNLDHGVVAVGYGTDAATGAAYWTVRNSWDPDWGENGYIRMERNVTART |
|
Parental | GKCGIAMMASYPTKSGANP |
| GKCGIAMMASYP.K.G.NP |
Retrocopy | GKCGIAMMASYPIKKGPNP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Oryza meridionalis was not studied using RNA-Seq expression data.
Oryza meridionalis was not studied using ChIP-Seq data.
Oryza meridionalis was not studied using EST data.
Oryza meridionalis was not studied using FANTOM5 data.
retro_omer_32 was not experimentally validated.
Retrocopy orthology:
Oryza meridionalis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.