RetrogeneDB ID:

retro_onil_11

Retrocopy
location
Organism:Tilapia (Oreochromis niloticus)
Coordinates:GL831403.1:550763..552272(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSONIG00000020404
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSONIG00000004218
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_onil_11
CTGATCTCTTCAGGATTCCCTGCTGTCTATCAGCTGAGACCAAAGAAAGAGACATTTGGAACTTTGACAAGAATGACTGT
TGGTGAAAAAAATGTGAAGAAAACAAATAAAACCATCTTACTTGTGGGTGAATCAGGAACAGGAAAATCCACTTTGATCA
ATGCTCTGGTCAATTACACCATTGGAGTGAAGTGGGAGGATGAAGTCTGGTTTCAGATCTTAGAGGATGTAAGTACAAGT
CAGGCAGAAAGTCAGACTTCAGATGTGATCGTGTACGAGATCTTTGGTTTTGAAGATAAAACTCTGCCCTACTCTCTGAC
CATCATCGATACTCCTGGATATGGAGACACCAGGGGGATTGGATGTGATGAGATTGTCATTCAAAGATTATTTGACTTGT
TCCGATCAGACGATGGAGTTCGTGAAGTTCATGCAGTGGGTCTGGTGATGAAGGCGAGCGTTAATCGACTGAGTAACCGA
CTGTCATACATCTTTGATTCAGTGATGTCTCTGTTTGGAAAAGACATGGAGAAAAGCATTGTAGCTCTGATCACACACTC
AGATGGAAGACGTCCTAAAAATGCTTTTCAAGCTCTTGAAGCAGCAAAAATAAACTGTGCCAAAAATGAGAAGAACCAGC
CTGTTCACTTCCTGTTTAATAGCTGCCAGCATGAAGACCGAACAGAGGAAGAAGAATACCTGAAAATTGCTGGTCAAATA
TCAGAGAAAGGAATGAGAGATTTCACAGATTTTCTGGAAAAAACTTCACCTCAAAAACTTGACAAAACTGTGGATGTTCT
GAATGAACGAATCAGACTGACAGCCTGCATCCAAAACCTGCAAGACAGAATCAAACTCACCGAACTAAAGCAGACAGAAA
TCAGACAGATTCAAGAAGCTCTGAAAAAACATAAAGAAGGGATGAAAAAACATCAGAATTTCACTGTTGAACTTGATGAA
GTCTACAAAGATAAAAAACATATAAATGGTGGAATGTATTTTGTTTTTTATAGAGGAGCCGTCTGCTGTACAATCTGTGA
AGAGAACTGTCACTATCCTGGATGCACAATGGCCTGGTATGCTAAACACTGTGAGGTCATGAAAGATGGCTGCTGCACTG
TTTGCACTGGGAAGTGTCTTGCATTAGATCATGTGAAAGAAAACTGGATCTATGTGACAAAGACAAGAAAAATTCAGAGG
GCTATAGAAGATGTGAAACAGAAGTATGAAAAGCACAAGGCAGAAAGTCAAAACACACTGAGCTTGTTGCAAAATCTTGA
ACGTGAAATGAACCAACTGACAGCAGAGAAGTCACAGTTACTGGATGAGTCCTACCAACATCTTGTCAGACTGGAGCAGA
TCGCTCTGAAAGCTGATTCAGCGTCCACTATTCTCCACTTGGACTTCCTGATTGAGAAGATGGAGGAAGAAGGAAACACA
GAGAAGGTCCAGAAACTGGAGGAGATGAGAAGCAGAGTGGATGAAGGAACCAGAGTAGCTCTGCAGTAC

ORF - retro_onil_11 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.05 %
Parental protein coverage: 96.95 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalLISSGPPAVYQLRPKKQKFGTLTRMTVGEKNPGKTNKTILLVGETGAGKSTLINALLNYTMGVKWEDGVW
LISSG.PAVYQLRPKK..FGTLTRMTVGEKN..KTNKTILLVGE.G.GKSTLINAL.NYT.GVKWED.VW
RetrocopyLISSGFPAVYQLRPKKETFGTLTRMTVGEKNVKKTNKTILLVGESGTGKSTLINALVNYTIGVKWEDEVW
ParentalFQIIEEEDRSQTETQTSDVIMYEMFGFEDKTLPYSLTIIDTPGYGNTRGIGHDDIISHRLLDLFGSDDGV
FQI.E....SQ.E.QTSDVI.YE.FGFEDKTLPYSLTIIDTPGYG.TRGIG.D.I...RL.DLF.SDDGV
RetrocopyFQILEDVSTSQAESQTSDVIVYEIFGFEDKTLPYSLTIIDTPGYGDTRGIGCDEIVIQRLFDLFRSDDGV
ParentalHEVHAAGLVMKASDNRLSDQLLYVFDSVMSLFGKIMEKNIVALITHSDGRRPKKLLQALEAANIKCAKNE
.EVHA.GLVMKAS.NRLS..L.Y.FDSVMSLFGK.MEK.IVALITHSDGRRPK...QALEAA.I.CAKNE
RetrocopyREVHAVGLVMKASVNRLSNRLSYIFDSVMSLFGKDMEKSIVALITHSDGRRPKNAFQALEAAKINCAKNE
ParentalKNQPVYFLFNNSQYEDRTEENKFSKHLWELTQENMNQLTDFLGKSNPQKLMKTGEVLNERIRLKACIQNL
KNQPV.FLFN..Q.EDRTEE....K.........M...TDFL.K..PQKL.KT..VLNERIRL.ACIQNL
RetrocopyKNQPVHFLFNSCQHEDRTEEEEYLKIAGQISEKGMRDFTDFLEKTSPQKLDKTVDVLNERIRLTACIQNL
ParentalKERIELSEMKQTEIRQMQEALKKHEELEEEMKRNKKFTVEVDEVYKEKETIDGGMRLLFFYEAAVCCTAC
..RI.L.E.KQTEIRQ.QEALKKH.E....MK....FTVE.DEVYK.K..I.GGM....FY..AVCCT.C
RetrocopyQDRIKLTELKQTEIRQIQEALKKHKE---GMKKHQNFTVELDEVYKDKKHINGGMYFV-FYRGAVCCTIC
ParentalEENCHYPGCTMAWKPAHCEVMKGGRCTVCTNKCPASDHVKEKWKYVTKTRRVTKTDEQMKKKYEKNVSEQ
EENCHYPGCTMAW...HCEVMK.G.CTVCT.KC.A.DHVKE.W.YVTKTR......E..K.KYEK...E.
RetrocopyEENCHYPGCTMAWYAKHCEVMKDGCCTVCTGKCLALDHVKENWIYVTKTRKIQRAIEDVKQKYEKHKAE-
ParentalKEKECTLLENLEKEMKQLTAEKSQLLDESYQHVVRLEEIALKADSASTIVHLDFLIEKMKQKGDTEKVQK
......LL.NLE.EM.QLTAEKSQLLDESYQH.VRLE.IALKADSASTI.HLDFLIEKM...G.TEKVQK
RetrocopySQNTLSLLQNLEREMNQLTAEKSQLLDESYQHLVRLEQIALKADSASTILHLDFLIEKMEEEGNTEKVQK
ParentalLEEMRSRVDKKNKKAAHW
LEEMRSRVD.....A...
RetrocopyLEEMRSRVDEGTRVALQY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Oreochromis niloticus was not studied using RNA-Seq expression data.
Oreochromis niloticus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_onil_11 retrocopy.
Oreochromis niloticus was not studied using FANTOM5 data.
retro_onil_11 was not experimentally validated.

Retrocopy orthology:
Oreochromis niloticus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Oreochromis niloticus ENSONIG00000004218 1 retrocopy
retro_onil_11 ,



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