>retro_onil_11
CTGATCTCTTCAGGATTCCCTGCTGTCTATCAGCTGAGACCAAAGAAAGAGACATTTGGAACTTTGACAAGAATGACTGT
TGGTGAAAAAAATGTGAAGAAAACAAATAAAACCATCTTACTTGTGGGTGAATCAGGAACAGGAAAATCCACTTTGATCA
ATGCTCTGGTCAATTACACCATTGGAGTGAAGTGGGAGGATGAAGTCTGGTTTCAGATCTTAGAGGATGTAAGTACAAGT
CAGGCAGAAAGTCAGACTTCAGATGTGATCGTGTACGAGATCTTTGGTTTTGAAGATAAAACTCTGCCCTACTCTCTGAC
CATCATCGATACTCCTGGATATGGAGACACCAGGGGGATTGGATGTGATGAGATTGTCATTCAAAGATTATTTGACTTGT
TCCGATCAGACGATGGAGTTCGTGAAGTTCATGCAGTGGGTCTGGTGATGAAGGCGAGCGTTAATCGACTGAGTAACCGA
CTGTCATACATCTTTGATTCAGTGATGTCTCTGTTTGGAAAAGACATGGAGAAAAGCATTGTAGCTCTGATCACACACTC
AGATGGAAGACGTCCTAAAAATGCTTTTCAAGCTCTTGAAGCAGCAAAAATAAACTGTGCCAAAAATGAGAAGAACCAGC
CTGTTCACTTCCTGTTTAATAGCTGCCAGCATGAAGACCGAACAGAGGAAGAAGAATACCTGAAAATTGCTGGTCAAATA
TCAGAGAAAGGAATGAGAGATTTCACAGATTTTCTGGAAAAAACTTCACCTCAAAAACTTGACAAAACTGTGGATGTTCT
GAATGAACGAATCAGACTGACAGCCTGCATCCAAAACCTGCAAGACAGAATCAAACTCACCGAACTAAAGCAGACAGAAA
TCAGACAGATTCAAGAAGCTCTGAAAAAACATAAAGAAGGGATGAAAAAACATCAGAATTTCACTGTTGAACTTGATGAA
GTCTACAAAGATAAAAAACATATAAATGGTGGAATGTATTTTGTTTTTTATAGAGGAGCCGTCTGCTGTACAATCTGTGA
AGAGAACTGTCACTATCCTGGATGCACAATGGCCTGGTATGCTAAACACTGTGAGGTCATGAAAGATGGCTGCTGCACTG
TTTGCACTGGGAAGTGTCTTGCATTAGATCATGTGAAAGAAAACTGGATCTATGTGACAAAGACAAGAAAAATTCAGAGG
GCTATAGAAGATGTGAAACAGAAGTATGAAAAGCACAAGGCAGAAAGTCAAAACACACTGAGCTTGTTGCAAAATCTTGA
ACGTGAAATGAACCAACTGACAGCAGAGAAGTCACAGTTACTGGATGAGTCCTACCAACATCTTGTCAGACTGGAGCAGA
TCGCTCTGAAAGCTGATTCAGCGTCCACTATTCTCCACTTGGACTTCCTGATTGAGAAGATGGAGGAAGAAGGAAACACA
GAGAAGGTCCAGAAACTGGAGGAGATGAGAAGCAGAGTGGATGAAGGAACCAGAGTAGCTCTGCAGTAC
ORF - retro_onil_11 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
72.05 % |
Parental protein coverage: |
96.95 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | LISSGPPAVYQLRPKKQKFGTLTRMTVGEKNPGKTNKTILLVGETGAGKSTLINALLNYTMGVKWEDGVW |
| LISSG.PAVYQLRPKK..FGTLTRMTVGEKN..KTNKTILLVGE.G.GKSTLINAL.NYT.GVKWED.VW |
Retrocopy | LISSGFPAVYQLRPKKETFGTLTRMTVGEKNVKKTNKTILLVGESGTGKSTLINALVNYTIGVKWEDEVW |
|
Parental | FQIIEEEDRSQTETQTSDVIMYEMFGFEDKTLPYSLTIIDTPGYGNTRGIGHDDIISHRLLDLFGSDDGV |
| FQI.E....SQ.E.QTSDVI.YE.FGFEDKTLPYSLTIIDTPGYG.TRGIG.D.I...RL.DLF.SDDGV |
Retrocopy | FQILEDVSTSQAESQTSDVIVYEIFGFEDKTLPYSLTIIDTPGYGDTRGIGCDEIVIQRLFDLFRSDDGV |
|
Parental | HEVHAAGLVMKASDNRLSDQLLYVFDSVMSLFGKIMEKNIVALITHSDGRRPKKLLQALEAANIKCAKNE |
| .EVHA.GLVMKAS.NRLS..L.Y.FDSVMSLFGK.MEK.IVALITHSDGRRPK...QALEAA.I.CAKNE |
Retrocopy | REVHAVGLVMKASVNRLSNRLSYIFDSVMSLFGKDMEKSIVALITHSDGRRPKNAFQALEAAKINCAKNE |
|
Parental | KNQPVYFLFNNSQYEDRTEENKFSKHLWELTQENMNQLTDFLGKSNPQKLMKTGEVLNERIRLKACIQNL |
| KNQPV.FLFN..Q.EDRTEE....K.........M...TDFL.K..PQKL.KT..VLNERIRL.ACIQNL |
Retrocopy | KNQPVHFLFNSCQHEDRTEEEEYLKIAGQISEKGMRDFTDFLEKTSPQKLDKTVDVLNERIRLTACIQNL |
|
Parental | KERIELSEMKQTEIRQMQEALKKHEELEEEMKRNKKFTVEVDEVYKEKETIDGGMRLLFFYEAAVCCTAC |
| ..RI.L.E.KQTEIRQ.QEALKKH.E....MK....FTVE.DEVYK.K..I.GGM....FY..AVCCT.C |
Retrocopy | QDRIKLTELKQTEIRQIQEALKKHKE---GMKKHQNFTVELDEVYKDKKHINGGMYFV-FYRGAVCCTIC |
|
Parental | EENCHYPGCTMAWKPAHCEVMKGGRCTVCTNKCPASDHVKEKWKYVTKTRRVTKTDEQMKKKYEKNVSEQ |
| EENCHYPGCTMAW...HCEVMK.G.CTVCT.KC.A.DHVKE.W.YVTKTR......E..K.KYEK...E. |
Retrocopy | EENCHYPGCTMAWYAKHCEVMKDGCCTVCTGKCLALDHVKENWIYVTKTRKIQRAIEDVKQKYEKHKAE- |
|
Parental | KEKECTLLENLEKEMKQLTAEKSQLLDESYQHVVRLEEIALKADSASTIVHLDFLIEKMKQKGDTEKVQK |
| ......LL.NLE.EM.QLTAEKSQLLDESYQH.VRLE.IALKADSASTI.HLDFLIEKM...G.TEKVQK |
Retrocopy | SQNTLSLLQNLEREMNQLTAEKSQLLDESYQHLVRLEQIALKADSASTILHLDFLIEKMEEEGNTEKVQK |
|
Parental | LEEMRSRVDKKNKKAAHW |
| LEEMRSRVD.....A... |
Retrocopy | LEEMRSRVDEGTRVALQY |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Oreochromis niloticus was not studied using RNA-Seq expression data.
Oreochromis niloticus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_onil_11 retrocopy.
Oreochromis niloticus was not studied using FANTOM5 data.
retro_onil_11 was not experimentally validated.
Retrocopy orthology:
Oreochromis niloticus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.