RetrogeneDB ID:

retro_onil_25

Retrocopy
location
Organism:Tilapia (Oreochromis niloticus)
Coordinates:GL831174.1:3883909..3884485(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSONIG00000020582
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:RHOG
Ensembl ID:ENSONIG00000007414
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_onil_25
ATGCAGACCATAAAGTGTGTGGTGGTGGGTGACGGGGCAGTGGGTAAAACCTGCCTGCTCATCTCTTATACAACCAATGC
CTTTCCTGAAGAGTACATTCCCACAGTGTTTGACAACTACAGCGCTCAGATGAGTGTGGATGGCCGCACTGTCAGCCTCA
ACCTGTGGGACACGGCAGGCCAAGAGGAGTATGACCGCTTGCGCACTCTGTCCTATCCCCAAACCAATGTGTTCATTATA
TGCTTTTCCATTGGCAGCCCCTCCTCACACGCCAATGTCAGGCACAAGTGGCACCCTGAGGTGTCTCACCACTGCCCAAA
TGTGCCCATCCTGCTGGTAGGCACCAAGAAGGACCTAAGAAGTGATGCAGAAACGGTGAAGAAGTTAAAGGAGCAGGGCC
TGGTCCCTACAACCCAGCAGCAGGGCAATGCCCTGGCCAAGCAGATTGGGGCTGTTAAATACATGGAGTGTTCTGCACTG
CTGCAGGATGGCGTCAAGGAGGTGTTTTCTGAAGCTGTGAGGGCAGTGTTGTATCCAGTCACGAAAAAGAAAAAAGAAAA
GTGTGTGCTTTTGTAA

ORF - retro_onil_25 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.01 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMQTIKCVVVGDGAVGKTCLLISYTTGAFPKEYIPTVFDNYSSQLTVDGRIISLNLWDTAGQEEYDRLRTL
MQTIKCVVVGDGAVGKTCLLISYTT.AFP.EYIPTVFDNYS.Q..VDGR..SLNLWDTAGQEEYDRLRTL
RetrocopyMQTIKCVVVGDGAVGKTCLLISYTTNAFPEEYIPTVFDNYSAQMSVDGRTVSLNLWDTAGQEEYDRLRTL
ParentalSYPQTNVFVICFSISSPASYENVKHKWHPEVSHHCPGVPILLVGTKSDLRNDAEIQRKLKEQNQAPVTHQ
SYPQTNVF.ICFSI.SP.S..NV.HKWHPEVSHHCP.VPILLVGTK.DLR.DAE...KLKEQ...P.T.Q
RetrocopySYPQTNVFIICFSIGSPSSHANVRHKWHPEVSHHCPNVPILLVGTKKDLRSDAETVKKLKEQGLVPTTQQ
ParentalQGAALARQIQAIRYMECSALNQEGIKEVFTEAVRAYLNPQPTVTKKPCVLL
QG.ALA.QI.A..YMECSAL.Q.G.KEVF.EAVRA.L.P.....K..CVLL
RetrocopyQGNALAKQIGAVKYMECSALLQDGVKEVFSEAVRAVLYPVTKKKKEKCVLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Oreochromis niloticus was not studied using RNA-Seq expression data.
Oreochromis niloticus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_onil_25 retrocopy.
Oreochromis niloticus was not studied using FANTOM5 data.
retro_onil_25 was not experimentally validated.

Retrocopy orthology:
Oreochromis niloticus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Oreochromis niloticus ENSONIG00000007414 1 retrocopy
retro_onil_25 ,
Oreochromis niloticus ENSONIG000000171511 retrocopy
Tetraodon nigroviridis ENSTNIG000000063251 retrocopy



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