RetrogeneDB ID: retro_onil_36

Retrocopy location

• Organism: Tilapia (Oreochromis niloticus)
• Coordinates: GL831144.1:4885337..4885502(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSONIG00000018945
• Aliases: None
• Description: None

Sequence

>retro_onil_36
TATGCAGAACAGCAGTGGGGACAGAGCATCTTCTTGGTCGATCCCAGACTTGATGGTGACTTGTGCTATTGGCTTGAAGT
TGGCCTGTCAAAGGAACCACATGCTCAAATGCCGGCCTGCTCTCCACATGCCACCTCCATCAAATCTTAGATAACCATTA
GTTGT

Alignment

ORF - retro_onil_36 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.73 %
• Parental protein coverage: 56.12 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YAEQQWGQSICLVDPALDGDLCYGLEVGATSKSFHVVLRQQGRTDSIESFVCVEC
          YAEQQWGQSI.LVDP.LDGDLCY.LEVG.................SI.S.....C
Retrocopy YAEQQWGQSIFLVDPRLDGDLCYWLEVGLSKEPHAQMPACSPHATSIKS*ITISC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Oreochromis niloticus was not studied using RNA-Seq expression data.

ChIP-Seq

Oreochromis niloticus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_onil_36 retrocopy.

TSS

Oreochromis niloticus was not studied using FANTOM5 data.

Lab

retro_onil_36 was not experimentally validated.

Homology

Retrocopy orthology:

Oreochromis niloticus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Oreochromis niloticus	ENSONIG00000018945	1 retrocopy	retro_onil_36 ,