RetrogeneDB ID: | retro_oniv_31 | ||
Retrocopylocation | Organism: | Indian wild rice (Oryza nivara) | |
Coordinates: | 2:917397..917916(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ONIVA02G01510 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ONIVA06G29530 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.06 % |
Parental protein coverage: | 72.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KVYFDVEIDGKPAGRVVMGLFGKTVPKTAENFRALCTGEKGTGKSGKALHFKGSAFHRIIPSFMIQGGDF |
.V.FD....G.PAGR.VM.L..K.VP.TAENFRALCTGEKG.GKSGK.LH.KGS.FHR.IP.FM.QGGDF | |
Retrocopy | RVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDF |
Parental | TLGDGRGGESIYGTKFADENFKIKHTGPGLLSMANAGRDTNGSQFFITTVTTSWLDGKHVVFGKVLSGMD |
T.G.G.GGESIYG.KFADE.FK.KH..PG.LSMANAG..TNGSQFFI.TV..SWLDGKHVVFG.V..GMD | |
Retrocopy | TRGNGTGGESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQFFICTVPCSWLDGKHVVFGRVVEGMD |
Parental | VVYKIEAEGQQSGSPKSKVVIADSGEL |
VV..IE..G...GS....VVIAD.G.L | |
Retrocopy | VVKAIEKVGSRGGSTAKPVVIADCGQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Aegilops tauschii | F775_31129 | 1 retrocopy | |
Musa acuminata | GSMUA_Achr7G17320_001 | 1 retrocopy | |
Oryza nivara | ONIVA06G29530 | 1 retrocopy |
retro_oniv_31 ,
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