>retro_opun_2
ATGAGAGCATTTAATTTGTTGGCACAGCTTCTCCGGTCCGTATGCGTCCTCCTCCTGGCCTCGTCGGCGACGGTGGCGGC
GCGGCGCCACGGCCCGGCGGCGCCTATCGCCGGGCAGAGCATGTACCTGGCGCCGAGCTGCCGCGCGCACACGGCGTCGC
TGACGGACTTCGGCGGCGTGGGCGACGGCACGACGTCGAACACGGCGGCGTTCAAGTCGGCTGTGGACCACCTGTCGCAG
TACTCCGGCGAGGGCGGCGGCGGCGCGATGCTGTACGTGCCGGCGGGGAAGTGGTTGACGGGGCCGTTCAACCTGACGAG
CCACTTCACCCTCTTCCTCCACAGCGACGCCGTCATCCTCGGCTCCCAGGACATGGCGGAGTGGCCCATCATCGATCCCC
TCCCCTCCTACGGCCGCGGGCGCGACAAGGCCGGCGGGCGGTACGCCAGCCTGATCGGCGGGTCGAACCTGACGGACGTG
GTGATCACCGGCGCGAACGGGACGATCGACGGGCAGGGGGCGATGTGGTGGTCCAAGTTCCACTCGAACAAGCTCAAGTA
CACGCGTGGGTACCTGATCGAGGTGATGCACTCAGACACGGTGGTGATATCGAACGTGACGCTGGTGAACTCGCCGGCGT
GGAACATCCACCCGGTGTACAGCAGCAACATCGTGGTGCAGGGGGTGACGATCCTGGCGCCGACGCACTCGCCCAACACC
GACGGCATCAACCCGGACTCGTGCTCCCACGTCCGCATCGAGGACTGCTACATCGTCTCCGGCGACGACTGCGTGGCCAT
CAAGTCCGGGTGGGACGAGTACGGCATCGCCTACGGGATGCCCAGCCAGCACATCGTGGTGCGGCGGCTGACGTGCGTGT
CGCCGACGAGCGCCGTGATCGCGCTGGGGAGCGAGATGTCGGGCGGGATCAGCGACGTGCGGGCGGAGGACATAACGGCG
GTGAACTCGGAGTCGGCGGTGCGGATCAAGACGGCGGTGGGTCGGGGGGCGTACGTGCGCGACGTGTTCGTCCGGGGGAT
GTCGCTGGACACGATGAAGTGGGTGTTCTGGATGACGGGGAACTACAAGTCGCACCCCGACGACGGGTACGACCCGAACG
CCATCCCGGTGGTGGAGAACATCAGCTACCAGGACGTGGTGGCGACGGGGGTGTACAAGGAGGCGGCGAGGCTGGAGGGC
ATCCAGGGCGCGCCCTTCCGCGGCATCTGCATCGCCAACGTCACCGCCGCTCTCTCCAAGTCGCGCAAGTACCCGTGGAC
CTGCACCGACATCGAGGGGGTGTCCTCCGCCGTCACGCCGGCGCCGTGCCAGCCGCTGCAGGGGGCGCACGACGGCGCCT
GCCCGTTCCCGACGGACACGCTGCCCATCGACCAGCTCGTCATGCAGCAGTGCGCCATCTAG
ORF - retro_opun_2 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
63.47 % |
Parental protein coverage: |
92.36 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | CRKHVAKITEYGGVGDGKRSNTAAFAKAVADLSMRAGDGG--AALVVPEGKWLTGPFNLTSHFTLFLDHG |
| CR.H.A..T..GGVGDG..SNTAAF..AV..LS...G.GG..A.L.VP.GKWLTGPFNLTSHFTLFL... |
Retrocopy | CRAHTASLTDFGGVGDGTTSNTAAFKSAVDHLSQYSGEGGGGAMLYVPAGKWLTGPFNLTSHFTLFLHSD |
|
Parental | AQILASQNLEDWPLIAPLPSYGRGRDEPGPRYSNFIAGSNLTDVIITGKNGTINGQGQVWWDKFHAKELT |
| A.IL.SQ....WP.I.PLPSYGRGRD..G.RY...I.GSNLTDV.ITG.NGTI.GQG..WW.KFH...L. |
Retrocopy | AVILGSQDMAEWPIIDPLPSYGRGRDKAGGRYASLIGGSNLTDVVITGANGTIDGQGAMWWSKFHSNKLK |
|
Parental | YTRGYLLELLHSNNIIISNVTFVDSPSWNLHPTYCTNVTISGITILAPVNSPNTDGIDPDSSSHVKIEDC |
| YTRGYL.E..HS....ISNVT.V.SP.WN.HP.Y..N....G.TILAP..SPNTDGI.PDS.SHV.IEDC |
Retrocopy | YTRGYLIEVMHSDTVVISNVTLVNSPAWNIHPVYSSNIVVQGVTILAPTHSPNTDGINPDSCSHVRIEDC |
|
Parental | YIVSGDDCIAVKSGWDQYGIKFNMPSQHILIRRLTCISPTSAMIALGSEMSGGIRDVRAVDNVAIDTESA |
| YIVSGDDC.A.KSGWD.YGI...MPSQHI..RRLTC.SPTSA.IALGSEMSGGI.DVRA.D..A...ESA |
Retrocopy | YIVSGDDCVAIKSGWDEYGIAYGMPSQHIVVRRLTCVSPTSAVIALGSEMSGGISDVRAEDITAVNSESA |
|
Parental | VRIKSGVGRGGFVKDVFVRGLSLHTMKWVFWMTGNYGQHPDNSSDPNALPEVTGINYSDVFAENV-TMAG |
| VRIK..VGRG..V.DVFVRG.SL.TMKWVFWMTGNY..HPD...DPNA.P.V..I.Y.DV.A..V...A. |
Retrocopy | VRIKTAVGRGAYVRDVFVRGMSLDTMKWVFWMTGNYKSHPDDGYDPNAIPVVENISYQDVVATGVYKEAA |
|
Parental | RLEGIPNDPYTGICISNVTAQLAPDAKKLQWNCTDVKGVTSDVSPKPC-PELGAAGKPCAFPEEELVIGP |
| RLEGI...P..GICI.NVTA.L.....K..W.CTD..GV.S.V.P.PC.P..GA....C.FP...L.I.. |
Retrocopy | RLEGIQGAPFRGICIANVTAALS-KSRKYPWTCTDIEGVSSAVTPAPCQPLQGAHDGACPFPTDTLPIDQ |
|
Parental | PELPKCS |
| .....C. |
Retrocopy | LVMQQCA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Oryza punctata was not studied using RNA-Seq expression data.
Oryza punctata was not studied using ChIP-Seq data.
Oryza punctata was not studied using EST data.
Oryza punctata was not studied using FANTOM5 data.
retro_opun_2 was not experimentally validated.
Retrocopy orthology:
Oryza punctata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.