>retro_opun_32
ATGAACTGCTTCTCCTGGAACCACAGCCTGCGGTGCTGGCATCGCAGCAATGACGGCGGCAGCCCGTGCAGCCCCTGCAG
CCAGGCCGCGCAGAGTTCCATGGGCATGCGCCGCCGATCGGAGCAGCAGCAGGCGGAGGCGGCGGGGGTGGGGGCGGGCG
GTGCGAAGAAGTTCACGCTGGCGCAGCTGTCGGCGGCCACGGACGGGTTCCACGAGTCCAACCTTGTCGGCGAGGGCGGG
TTCGGCAGGGTGTACAGGGGCCGCCTCCTCGTCGACCAAGGGGTCGGACCCGTCGCCGTGAAGCAACTCTGCCACGGCGG
CGCGCAGGGAACCCGCGAGTTCCTGGTGGAATGCATGATGCTCATGATGCTGCACCACCCCAACCTCGTCTCCCTCGTCG
GCTACTGCGCCGACGCCGGCGAGCGCCTCCTCGTCTACGAGTTCCTGCCACGCGGCAGCCTCGACGCGCACCTCTTCGGC
GGTGGCGACTGTGGCAGGAGGCAGGAGCCCCCGCTGGGCTGGGGCGCGCGGGTCAGGATCGCGCTCGGCGCGGCCAGGGG
GCTGCGCTACCTGCACGAGGTGGTGACGCCGCCGGTGATCTACCGCGACCTCAAGGCGTCCAACATCCTGCTCGACGACG
ACCTCAACCCCAAGCTGTCAGACTTTGGCCTCGCCAAGCTGGGCCCCATCGGCGACGACACCCACGTGTCCACGCGCGTC
ATGGGCACCTACGGCTACTGCGCGCCCGACTACGCCATGAGCGGCAAGCTCAACGTTAAGTCCGACGTGTACAGCTTCGG
CGTCGTGCTCCTCGAGCTCATCACGGGACGCAGGGCCTTCGACGCCGCCCGCTCCGCCCCGGAGGAGCAGCGCCTCCTCC
TCTGGGCGCGCCCCTACCTTAACCTCGCCGGCGACCGCAGGAGGTGCTTCGCCCTGGCCGACCCGGCGTTGCAGGGCCGC
TACCCCCGCCGCGCCTTCTACCAGCTCGCCGTCGTCACCTCGCTCTGCCTCCGAGACAACCCCAACCTCCGCCCCTCCAT
GACAGACGTCACCCAAGCCCTCGACCACGTCGCCTCCCAGTCACAGCCATGGGAAGACAAGCAAAGAGCCATGCCTGATT
AA
ORF - retro_opun_32 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
54.98 % |
Parental protein coverage: |
65.93 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | GHGEATIFTLRELADATNNFRTEYLLGRGGFGSVY--KAFLNDGM-VVAIKQLDLNGLQGNREFLVEVLM |
| G.G.A..FTL..L..AT..F....L.G.GGFG.VY........G...VA.KQL...G.QG.REFLVE..M |
Retrocopy | GAGGAKKFTLAQLSAATDGFHESNLVGEGGFGRVYRGRLLVDQGVGPVAVKQLCHGGAQGTREFLVECMM |
|
Parental | LSLLHHPNLVKLFGYCVDGDQRLLIYEYMPLGSLEDHLH---DLRPGQEP-LDWTTRMKIAADAAAGLEY |
| L..LHHPNLV.L.GYC.D...RLL.YE..P.GSL..HL....D....QEP.L.W..R..IA..AA.GL.Y |
Retrocopy | LMMLHHPNLVSLVGYCADAGERLLVYEFLPRGSLDAHLFGGGDCGRRQEPPLGWGARVRIALGAARGLRY |
|
Parental | LHDEAIPAVIYRDIKPSNILLGEGYNAKLSDFGLAKLGPVGDKTHVTTRVMGTHGYCAPEYLSTGKLTIK |
| LH....P.VIYRD.K.SNILL....N.KLSDFGLAKLGP.GD.THV.TRVMGT.GYCAP.Y...GKL..K |
Retrocopy | LHEVVTPPVIYRDLKASNILLDDDLNPKLSDFGLAKLGPIGDDTHVSTRVMGTYGYCAPDYAMSGKLNVK |
|
Parental | SDIYSFGVVFLELITGRRALDSNR-PPEEQDLVAWARP---LFKDQRKFPKMADPSLHGHFPKRGLYQAL |
| SD.YSFGVV.LELITGRRA.D..R..PEEQ.L..WARP...L..D.R.....ADP.L.G..P.R..YQ.. |
Retrocopy | SDVYSFGVVLLELITGRRAFDAARSAPEEQRLLLWARPYLNLAGDRRRCFALADPALQGRYPRRAFYQLA |
|
Parental | AIAAMCLQEKAKNRPSIREVAVALSYLASQT |
| .....CL......RPS...V..AL...ASQ. |
Retrocopy | VVTSLCLRDNPNLRPSMTDVTQALDHVASQS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Oryza punctata was not studied using RNA-Seq expression data.
Oryza punctata was not studied using ChIP-Seq data.
Oryza punctata was not studied using EST data.
Oryza punctata was not studied using FANTOM5 data.
retro_opun_32 was not experimentally validated.
Retrocopy orthology:
Oryza punctata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.