RetrogeneDB ID: | retro_opun_35 | ||
Retrocopylocation | Organism: | Red rice (Oryza punctata) | |
Coordinates: | 7:25006715..25007171(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | OPUNC07G18390 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | OPUNC08G01190 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.83 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGRMHSRGKGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSK |
MGRMHS.GKG.S.S.LPY.R..P.W.K..AS.VEEMI..AAKKGQ.PSQIG..LRD.H..PL...VTG.K | |
Retrocopy | MGRMHSSGKGMSCSVLPYRRAAPAWVKASASEVEEMIVRAAKKGQLPSQIGTILRDAHAVPLAQGVTGGK |
Parental | ILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWK |
ILR.LK..GLAPE.PEDLYFLIKKAVA.RKHLERNRKDKD.KFRLILVESR.HRL.RYY...KK.P..WK | |
Retrocopy | ILRVLKSRGLAPEVPEDLYFLIKKAVAMRKHLERNRKDKDTKFRLILVESRVHRLTRYYRLAKKIPASWK |
Parental | YESTTASTLVA |
YESTTASTLVA | |
Retrocopy | YESTTASTLVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryza brachyantha | OB02G23100 | 1 retrocopy | |
Oryza punctata | OPUNC08G01190 | 1 retrocopy |
retro_opun_35 ,
|
Oryza glaberrima | ORGLA08G0005800 | 1 retrocopy | |
Sorghum bicolor | Sb07g001620 | 1 retrocopy |