RetrogeneDB ID:

retro_opun_4

Retrocopy
location
Organism:Red rice (Oryza punctata)
Coordinates:3:29042293..29042803(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:OPUNC03G26800
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:OPUNC01G37500
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_opun_4
ATGGCGAAGAAAGCAACACCCAACGCCGCCGCAGCCGGCAACTGCAAGTACTGGCTGCTCAAGACGGAGCCGGGGGAGTG
GTCGTGGTCCGACCAGGCGCGCGCCCCCGGCGGCGGCGTCGCGCCGTGGGACGGCGTCCGCAACCGCCAGGCCATCAACA
GCCTCCGCGCCATGCGGGAAGGCGACCGCTGCCTCTTCTACCACTCCGGCGCCGGGGCCGCCTCCCGCCGCGTCGTCGGC
GTTGTGGAGGTCGCCAGGGAGTGGTACGAGGGGGAGGCGGCGAGCGGCGGCGCCGTTGACGTCCGCGCGGTGGGGGAGTT
CCGGCGGCCGGTGGCGCTCGGGGACATCAAGAAGGCGGCGGGTGGCGGCGAGGTGGAGGGGATGAGGGAGTTCGCGCTGC
TCCGGCAGCCTCGGCTGTCGGTGATGCCCGTGCCGGCGAAGGTCTGGGATTGGATTTGCGAGATGGGAGGGGGCTTTGTG
CAAGATGGGGAGGATGAAGATGAATGCTGA

ORF - retro_opun_4 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 58.82 %
Parental protein coverage: 50.25 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalWLAVANRRRSTPRRKSSGDEREGRDEAKRQASMSHILTNAPVARGLYEGEAASGSAVDVRAVGEFQLPVA
W..V.NR......R......R.........A..........VAR..YEGEAASG.AVDVRAVGEF..PVA
RetrocopyWDGVRNRQAINSLRAMREGDRCLFYHSGAGAASRRVVGVVEVAREWYEGEAASGGAVDVRAVGEFRRPVA
ParentalLGDIKKAKGGEEVEGMREFALLRRPRLSVMPV
LGDIKKA.GG.EVEGMREFALLR.PRLSVMPV
RetrocopyLGDIKKAAGGGEVEGMREFALLRQPRLSVMPV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Oryza punctata was not studied using RNA-Seq expression data.
Oryza punctata was not studied using ChIP-Seq data.
Oryza punctata was not studied using EST data.
Oryza punctata was not studied using FANTOM5 data.
retro_opun_4 was not experimentally validated.

Retrocopy orthology:
Oryza punctata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Oryza punctata OPUNC01G37500 1 retrocopy
retro_opun_4 ,



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