>retro_opun_45
ATGGTAGAAGGGTCAGCTCAAGGACTCCACACCGGTAAGGTGATGCAGGAAGCAACACAGTGGCTCGGGAGCATGCGGAG
ACCTTGGTGCGTGAGATGTAGGCACGGTGGTCTCTGGGACTATCGCGTTAGATCGGCAACTTGGCAAGGGAACGAAGACG
AACATCTGCTATTTCAGATTGCCAATGTTGGCACCATTGAAAGCCTAGACTACGAGCTATAAGTCCCTCAAACCCTGTGT
CTTTTCTTAATCTACTCCGTACATGTGGAAATTTTGATCTTTATTATATCTAATGTCTTTGTTCTTGAGTCT
ORF - retro_opun_45 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
64.42 % |
Parental protein coverage: |
94.44 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MVEGSAQGIHTGKVVQEATQWPGSMWRPWCVRFRHGGLRDYHVRSATWQGNDDEHLPHQIANVGPIESLD |
| MVEGSAQG.HTGKV.QEATQW.GSM.RPWCVR.RHGGL.DY.VRSATWQGN.DEHL..QIANVG.IESLD |
Retrocopy | MVEGSAQGLHTGKVMQEATQWLGSMRRPWCVRCRHGGLWDYRVRSATWQGNEDEHLLFQIANVGTIESLD |
|
Parental | YEHYSGAVLTIY--YHIWCVVVIRLFENVGEVET |
| YE......L.....Y.......I....NV...E. |
Retrocopy | YEL*VPQTLCLFLIYSVHVEILIFIISNVFVLES |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Oryza punctata was not studied using RNA-Seq expression data.
Oryza punctata was not studied using ChIP-Seq data.
Oryza punctata was not studied using EST data.
Oryza punctata was not studied using FANTOM5 data.
retro_opun_45 was not experimentally validated.
Retrocopy orthology:
Oryza punctata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.