>retro_osat_21
ATGGAGGAGGAGCGGCGCGTGCTCGTGACCGGCGGCAATGGTTTCATCGGATCCTGGATCGTGCGGATCCTTCTCGCACG
CGGGTACGCCGTGACCGCAACCTACCAGCCGGGCACGGACGCTGCGCACCTCCTCGCCCTCGACGACGAAAGGCTCCTCC
TGCTCCCCGCCGACCTGCTTGATGCGGGCGCCATCTCCGCGGCGGCGGCAGCGGGCGGGGGCTGCCGGGCGGGCGTGCTG
CACGTGGCCTCCCCGTGCACGCTGGCTGACCCGCGGGATCCGCAGGCCGAACTGGTGGAGCCGGCGGTGCGGGGCACGCT
GCACGTGCTGGAGGCGGCGCGGGGCGCGGGAGCGCGGCGCGTGGTGGTGACGTCCTCCATCTCAGCCATGGTGCCCAACC
CGGGGTTGGCGGCGGGAGAGCTCGTCGACGAGCGAAGCTGGACGGACATGGAATTCTGCAAGGCCCGGGGCAAGTGGTAC
CCGGTGTCCAAGACGCTGGCCGAGAGGGCGGCGTGGGAGTACGCGGCGCGGTGGCCCGGCTTCGAGTTGGCCACCATCCT
GCCGTCGACATGCCTCGGCCCGCTCCTGCAGCCCACCCTGAACGCCAGCTCTGTCGTGCTGCAGCGCCTCTTGCAGGGCT
CCACGGACGACCAGGCGGACTACTGGCTCGGCGCCGTCCACGTCCGCGACGTCGCCGCCGCCCACCTCCTGCTGCTCGAG
GCTCCCACCGTCTCCGGGAGGTACCTCTGCACCAACGGCATCTACCAGTTCAGCGACTTCGCACGGCTAGCTGCCAGGAT
CTGCCCCGCGTACGCCCACGCCATCCACCGCTTCGAGGAGGGGACTACACAACCGTGGCTCGTGCCGCGCGACGCCCGTG
ACGCAGCACGCCGGCTCCTCGACCTCGGCCTCGTCCTCACTCCCCTCGAGGAGGCCATCAAGGACGCGGAGAAGAGTCTC
ACCGATAAATGCTTCCTTCCTTGA
ORF - retro_osat_21 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
52.1 % |
Parental protein coverage: |
69.76 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | TDHLHALAAAGGGEGRRLRVFPGDLLDGAALLAAAR---GC-SGVFHLASPCIVDRVLDPQAQLMVPAVE |
| TD..H.LA........RL...P.DLLD..A..AAA....GC..GV.H.ASPC......DPQA.L..PAV. |
Retrocopy | TDAAHLLAL----DDERLLLLPADLLDAGAISAAAAAGGGCRAGVLHVASPCTLADPRDPQAELVEPAVR |
|
Parental | GTLNVLRAAKDAGGVRRVVVTSSISAIVPSPGWPAGEVRDERCWTDLDYCEKNGVWYPASKTLAEKAAWK |
| GTL.VL.AA..AG..RRVVVTSSISA.VP.PG..AGE..DER.WTD...C...G.WYP.SKTLAE.AAW. |
Retrocopy | GTLHVLEAARGAGA-RRVVVTSSISAMVPNPGLAAGELVDERSWTDMEFCKARGKWYPVSKTLAERAAWE |
|
Parental | FAEE-NGLDVVVVNPGTVMGLVIPPTINASMAMLVRLLEGCTEEYADFYMGPVHVEDVALAHILLYENPS |
| .A....G.......P.T..G....PT.NAS...L.RLL.G.T...AD...G.VHV.DVA.AH.LL.E.P. |
Retrocopy | YAARWPGFELATILPSTCLGPLLQPTLNASSVVLQRLLQGSTDDQADYWLGAVHVRDVAAAHLLLLEAPT |
|
Parental | ASGRHLCVQSIAHWSDFASKVAELYPEY |
| .SGR.LC...I...SDFA...A...P.Y |
Retrocopy | VSGRYLCTNGIYQFSDFARLAARICPAY |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Oryza sativa japonica was not studied using RNA-Seq expression data.
Oryza sativa japonica was not studied using ChIP-Seq data.
Oryza sativa japonica was not studied using EST data.
Oryza sativa japonica was not studied using FANTOM5 data.
retro_osat_21 was not experimentally validated.
Retrocopy orthology:
Oryza sativa japonica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.