RetrogeneDB ID: | retro_pabe_102 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 12:122462726..122463185(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000005024 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NME3 | ||
Ensembl ID: | ENSPPYG00000006961 | ||
Aliases: | None | ||
Description: | NME/NM23 nucleoside diphosphate kinase 3 [Source:HGNC Symbol;Acc:7851] |
Percent Identity: | 64.19 % |
Parental protein coverage: | 87.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVV |
ERTF.A.KPDGVQR.LVGEI..RFE.KGF.LVA.K...ASEE.L..HY..L...PF...LVKYM.SGPVV | |
Retrocopy | ERTFVAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLPASEEHLKQHYIDLKDCPFFPGLVKYMNSGPVV |
Parental | AMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWED |
AMVW.GL.VV.T.R...G.TNPAD..PGTIRGDFCI.VG.N...GSDSV.SA..EI.LWF...EL..... | |
Retrocopy | AMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIMYGSDSVKSAEKEISLWFKPEELVDYKS |
Parental | SAGHWLYE |
.A..WLYE | |
Retrocopy | PAHDWLYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 37 .10 RPM | 0 .00 RPM |
SRP007412_cerebellum | 9 .36 RPM | 0 .00 RPM |
SRP007412_heart | 19 .60 RPM | 0 .00 RPM |
SRP007412_kidney | 64 .93 RPM | 0 .00 RPM |
SRP007412_liver | 30 .94 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1063 |
Pan troglodytes | retro_ptro_91 |
Gorilla gorilla | retro_ggor_71 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Pongo abelii | ENSPPYG00000006908 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006961 | 1 retrocopy |
retro_pabe_102 ,
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