>retro_pabe_1637
GAGCTCCACCTTCTCTGACTGAGGCCGGAGGTGCACACAAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAACAGTTCCT
AGCCATCCTCCCAGAAAAGCTGCAGCCCTGGGTGCAGAGGCATCATCCAGAAAATGGAGAGGAAGCTGTGACTGTGCTAG
AGGATGTGCAGAGAGAGCTTGATGGACCAGAGCAGGTCTTCTTTTTTGGACGAAGAAGGGACATGGTTGCAGAGAAGCTA
GCACCTTCAGAAATCACTGAGCAATTGCCAACTAGCCAGCGCACGCCCGTGAAGAAGCAGCTCCAGCGAGCATCATGGGA
GCTGCAGTCCTTAAGACCACATGATGAAAACATCAAAACTATAAATGTGAAATCCGCTTCAAGGCAAAAGACTTCTTCAG
GCATAGAACTGCATTGCGATGTTTCCAACATCCTTGGTATAAATGCCTCCCAGAGTTCCACATATAGAGGAATCTATGAA
CAAGATGATTCAAAATATGAACATAGG
ORF - retro_pabe_1637 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
78.7 % |
Parental protein coverage: |
50.3 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | ELCHLWLRPEVHTKEQILELLVLEQFLAILPNELQASVQKHHLENGEETVTMLEDVEREFDGPEQIFF-G |
| EL..L.LRPEVHTKEQILELLVLEQFLAILP..LQ..VQ.HH.ENGEE.VT.LEDV.RE.DGPEQ.FF.G |
Retrocopy | ELHLL*LRPEVHTKEQILELLVLEQFLAILPEKLQPWVQRHHPENGEEAVTVLEDVQRELDGPEQVFFFG |
|
Parental | RRKDMIAEKLAPSEITEELPSSQLMPVKKQPQGASWELQSLRPHDEDIKTTNVKSASRQKTSLGIELHCH |
| RR.DM.AEKLAPSEITE.LP.SQ..PVKKQ.Q.ASWELQSLRPHDE.IKT.NVKSASRQKTS.GIELHC. |
Retrocopy | RRRDMVAEKLAPSEITEQLPTSQRTPVKKQLQRASWELQSLRPHDENIKTINVKSASRQKTSSGIELHCD |
|
Parental | VSNIFHMNASQSSTYRGTYEQ-DGRFERR |
| VSNI...NASQSSTYRG.YEQ.D...E.R |
Retrocopy | VSNILGINASQSSTYRGIYEQDDSKYEHR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
0 .22 RPM |
SRP007412_cerebellum |
0 .00 RPM |
0 .61 RPM |
SRP007412_heart |
0 .00 RPM |
0 .15 RPM |
SRP007412_kidney |
0 .00 RPM |
1 .89 RPM |
SRP007412_liver |
0 .00 RPM |
0 .73 RPM |
Pongo abelii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_pabe_1637 retrocopy.
Pongo abelii was not studied using FANTOM5 data.
retro_pabe_1637 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_pabe_1637 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.