RetrogeneDB ID: | retro_pabe_2087 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2b:115787316..115787987(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DKFZP468J1719 | ||
Ensembl ID: | ENSPPYG00000008387 | ||
Aliases: | None | ||
Description: | max-like protein X [Source:RefSeq peptide;Acc:NP_001127572] |
Percent Identity: | 76.42 % |
Parental protein coverage: | 93.44 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MTEPGASPEDPWVKVEYAYSDNSLDPGLFVESTRKGSVVSRANSIGSTSASSVPNTDDEDSDYHQEAYKE |
M.E.GA.P.DPWVKVEY.YS..S.D...F.EST..G.VVSRANSIGSTSASS.PNTD..DSDYHQ....E | |
Retrocopy | MMELGACPKDPWVKVEYVYSYKSSDLKYFIESTHNGTVVSRANSIGSTSASSIPNTDEKDSDYHQ----E |
Parental | SYKDRRRRAHTQAEQKRRDAIKRGYDDLQTIVPTCQQQDFSIGSQKLSKAIVLQKTIDYIQFLHKEKKKQ |
SYKD..R.AHT.AEQKR.D.IKRG.DDLQTI.PTCQQQD..IGS.KLSKAI.LQK.IDY.QFLHKEKK.Q | |
Retrocopy | SYKDQ*R*AHTEAEQKRKDVIKRGCDDLQTIIPTCQQQDSCIGSRKLSKAIILQKIIDYTQFLHKEKKMQ |
Parental | EEEVSTLRKDVTALKIMKVNYEQIVKAHQDNPHE-GEDQVSDQVKFNVFQGIMDSLFQSFNASISVASFQ |
EEEVSTL.KD.TALKIM..NYEQ.VKAHQ.NPHE.GEDQ.SDQVK..VF.GIMDSLFQSFNA.ISV..FQ | |
Retrocopy | EEEVSTLWKDLTALKIMRGNYEQTVKAHQENPHE<GEDQASDQVKVSVFRGIMDSLFQSFNAFISVTNFQ |
Parental | ELSACVFSWIEEHCKPQTL |
ELSACVFS.IEEHCKPQ.. | |
Retrocopy | ELSACVFS*IEEHCKPQAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 27 .70 RPM |
SRP007412_cerebellum | 0 .00 RPM | 38 .67 RPM |
SRP007412_heart | 0 .00 RPM | 35 .52 RPM |
SRP007412_kidney | 0 .27 RPM | 38 .52 RPM |
SRP007412_liver | 0 .15 RPM | 54 .69 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2216 |
Pan troglodytes | retro_ptro_1681 |
Gorilla gorilla | retro_ggor_1748 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005011 | 1 retrocopy | |
Homo sapiens | ENSG00000108788 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010869 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010258 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014918 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011638 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008387 | 1 retrocopy |
retro_pabe_2087 ,
|
Pan troglodytes | ENSPTRG00000009208 | 1 retrocopy |