RetrogeneDB ID: | retro_pabe_2136 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2b:82675902..82676921(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJB1 | ||
Ensembl ID: | ENSPPYG00000009647 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily B, member 1 [Source:HGNC Symbol;Acc:5270] |
Percent Identity: | 89.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE |
MGKD.YQTLGLARGASDEEIKRAY.RQALRYHP.KNKEPGAEEKFKEIAEAY.VL.DPRKREIFD.Y.EE | |
Retrocopy | MGKDNYQTLGLARGASDEEIKRAYSRQALRYHPHKNKEPGAEEKFKEIAEAYEVLRDPRKREIFDHYAEE |
Parental | GLKGSGPSGGSGGGANGTSFSYTFHGDPHAMFAEFFGGRNPFDTFFGQRNGEEGMDIDDPFSGFPMGMGG |
GLKGSGPSGGSGGGA..TSFSYTF.GDPHAMFAEF.GGRNP.DTFFGQRNGEEGMDI.DPFSGFPMGMGG | |
Retrocopy | GLKGSGPSGGSGGGASATSFSYTFRGDPHAMFAEFRGGRNPSDTFFGQRNGEEGMDIADPFSGFPMGMGG |
Parental | FTNVNFGRSRSAQEPARKKQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKK |
FTN.NFGRSR.AQEP.RKKQDPP.TH.L.VSLEEIYS.CTK.MKISHKRLNPD.KSIRNEDKILTIEVKK | |
Retrocopy | FTNMNFGRSRPAQEPTRKKQDPPGTHNL*VSLEEIYSSCTKRMKISHKRLNPDRKSIRNEDKILTIEVKK |
Parental | GWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRT |
GWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIY..RISL.EALCG.TVNVPTLD.RT | |
Retrocopy | GWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYLSRISLPEALCGRTVNVPTLDSRT |
Parental | IPVVFKDVIRPGMRRKV-PGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLPI |
IPVVFKD.IRPG..RKV..GEGLPLPKTPEKRGDLI.E.EVIFPERIPQTSRTVLEQ.LP. | |
Retrocopy | IPVVFKDAIRPGTLRKV<SGEGLPLPKTPEKRGDLITELEVIFPERIPQTSRTVLEQILPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 89 .35 RPM |
SRP007412_cerebellum | 0 .12 RPM | 93 .51 RPM |
SRP007412_heart | 0 .18 RPM | 36 .12 RPM |
SRP007412_kidney | 0 .56 RPM | 192 .12 RPM |
SRP007412_liver | 0 .34 RPM | 96 .52 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1728 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000004666 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000009647 | 1 retrocopy |
retro_pabe_2136 ,
|
Pongo abelii | ENSPPYG00000011252 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018228 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000010594 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000021824 | 1 retrocopy |