RetrogeneDB ID: | retro_pabe_3192 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:148129130..148130362(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STRADB | ||
Ensembl ID: | ENSPPYG00000013074 | ||
Aliases: | None | ||
Description: | STE20-related kinase adaptor beta [Source:HGNC Symbol;Acc:13205] |
Percent Identity: | 92.48 % |
Parental protein coverage: | 98.09 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | TSRTQVESLRPEKQ-SETSIHQYLVDEPTLSWSPPSTRASEVLCSTNVSHYELQVEIGRGFDNLTSVHLA |
.SRTQVESL..EKQ.SETSIHQYLVDEPTLSWSPPSTRAS.V.CSTNVSH..LQVEI.RGFDNLTSVHLA | |
Retrocopy | SSRTQVESLKHEKQ>SETSIHQYLVDEPTLSWSPPSTRASKVVCSTNVSHCKLQVEIRRGFDNLTSVHLA |
Parental | RHTPTGTLVTIKITNLENCNEERLKALQKAVILSHFFRHPNITTYWTVFTVGSWLWVISPFMAYGSASQL |
.HTPTGTLVTIKITNLENCNEE.LK.LQKA.ILSHFFRHPN.TTYWTVFTVGS.LWVISPFMAYGSASQL | |
Retrocopy | WHTPTGTLVTIKITNLENCNEECLKVLQKAMILSHFFRHPNMTTYWTVFTVGS*LWVISPFMAYGSASQL |
Parental | LRTYFPEGMSETLIRNILFGAVRGLNYLHQNGCIHRSIKASHILISGDGLVTLSGLSHLHSLVKHGQRHR |
LRTYFPEGMS.TLIR.ILFGAVRGLNYL.Q.GC.HR.IKASHILISGDGLVTLSGLSHLHSLVKHGQR.R | |
Retrocopy | LRTYFPEGMSKTLIRTILFGAVRGLNYLYQYGCTHRRIKASHILISGDGLVTLSGLSHLHSLVKHGQRQR |
Parental | AVYDFPQFSTSVQPWLSPELLRQDLHGYNVKSDIYSVGITACELASGQVPFQDMHRTQMLL-QKLKGPPY |
AVYDFPQFS.SVQPWLSPELLRQDLHGYNVKSDIYSVGIT.CELASGQV.FQDMHRTQMLL.QKLKGPPY | |
Retrocopy | AVYDFPQFSISVQPWLSPELLRQDLHGYNVKSDIYSVGITTCELASGQVTFQDMHRTQMLL>QKLKGPPY |
Parental | SPLDISIFPQSESRMKNSRSGVDSGIGESVLVSSGTHTVNSDRLHTPSSKTFSPAFFSLVQLCLQQDPEK |
SPLDISIFPQSES.MKNS.SGVDSGIG.SVLVSSGTHTVNSDRLHTPSSK.FSPAFFS.VQLCLQQDPEK | |
Retrocopy | SPLDISIFPQSESKMKNSWSGVDSGIGASVLVSSGTHTVNSDRLHTPSSKAFSPAFFSWVQLCLQQDPEK |
Parental | RPSASSLLSHVFFKQMKEESQDSILSLLPPAYNKPSISLPPVLPWTEPECDFPDEKDSYWEF |
RPSASSLLSHVFFKQMKEESQDSILSLLPPAYNKPSISLPPVLPWTEPECDFPDEKDSYWEF | |
Retrocopy | RPSASSLLSHVFFKQMKEESQDSILSLLPPAYNKPSISLPPVLPWTEPECDFPDEKDSYWEF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 7 .13 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .19 RPM |
SRP007412_heart | 0 .06 RPM | 40 .79 RPM |
SRP007412_kidney | 0 .30 RPM | 57 .58 RPM |
SRP007412_liver | 0 .12 RPM | 24 .54 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3920 |
Gorilla gorilla | retro_ggor_2638 |
Macaca mulatta | retro_mmul_1741 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000082146 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000012183 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018141 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006967 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010744 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013074 | 1 retrocopy |
retro_pabe_3192 ,
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