RetrogeneDB ID:

retro_pabe_3246

Retrocopy
location
Organism:Orangutan (Pongo abelii)
Coordinates:8:26189569..26189844(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSPPYG00000014851
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_pabe_3246
ATGGAAAACTTTCTGGGAAGTTACTTCATTCTTTTTCTCTTTTTCAAAAGGCATCTCGCAGCGCCAACTGTTTTTCTCGG
AAGGAACGCTTATTTTTTGACCAGACATTCTGGCTATACCACATCATCATAAAGTTCTTCTGTTTTTTCCACTCTTTATT
TTTTGAACTGGAAAATGGATTCACTTTGGTTTCCTTCCTCGCAAATTCTTTTCGATCTGTCTTTCCAGCCATTGCAGTTG
CTAATCTTGTCTCTTTGTCAGACTTTGTCTTTTTA

ORF - retro_pabe_3246 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.11 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMENLPGSYFILFLFFK-SASRSANSCFSRKERLFFDRTFWLYRIIIKFFCFFFSLFVELENGFVLVFFLI
MEN..GSYFILFLFFK..ASRSAN.CFSRKERLFFD.TFWLY.IIIKFFCFF.SLF.ELENGF.LV.FL.
RetrocopyMENFLGSYFILFLFFK<KASRSAN-CFSRKERLFFDQTFWLYHIIIKFFCFFHSLFFELENGFTLVSFLA
ParentalNSFRSVFPAIAVASLVSLSDFGFL
NSFRSVFPAIAVA.LVSLSDF.FL
RetrocopyNSFRSVFPAIAVANLVSLSDFVFL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .39 RPM 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM 0 .00 RPM
SRP007412_heart 0 .15 RPM 0 .00 RPM
SRP007412_kidney 0 .13 RPM 0 .00 RPM
SRP007412_liver 0 .06 RPM 0 .00 RPM
Pongo abelii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_pabe_3246 retrocopy.
Pongo abelii was not studied using FANTOM5 data.
retro_pabe_3246 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_pabe_3246 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species Parental gene accession Retrocopies number
Homo sapiens ENSG000002687882 retrocopies
Gorilla gorilla ENSGGOG000000279291 retrocopy
Microcebus murinus ENSMICG000000066761 retrocopy
Pongo abelii ENSPPYG00000014851 2 retrocopies
retro_pabe_1798, retro_pabe_3246 ,



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