RetrogeneDB ID: | retro_pabe_337 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:192382740..192383100(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | METTL21D | ||
Ensembl ID: | ENSPPYG00000005798 | ||
Aliases: | None | ||
Description: | methyltransferase like 21D [Source:HGNC Symbol;Acc:20352] |
Percent Identity: | 90.83 % |
Parental protein coverage: | 52.4 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MNKHLVTGSVQAKVLKWGEEIEGFPSPPDYILMADCIYYEESLEPLLKTLKDISGFETCIICCYEQRTMG |
M.KHLVTGSVQAKVLK.GEEIE.FP.PPDYILMADCIYYEESLEPLLKTLKDISGFETCIICCYEQ..MG | |
Retrocopy | MSKHLVTGSVQAKVLK*GEEIEDFPPPPDYILMADCIYYEESLEPLLKTLKDISGFETCIICCYEQ*RMG |
Parental | KNPEIEKKYFELLQLDFDFEKIPLEKHDEEYRSEDIHIIYIRKKKSKFPS |
K.P.IEKKYFELLQLDFDFEKIPLEKHDEEY.SEDIHIIYIRKKK.KF.S | |
Retrocopy | KSPDIEKKYFELLQLDFDFEKIPLEKHDEEYQSEDIHIIYIRKKKLKFSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .50 RPM | 2 .54 RPM |
SRP007412_cerebellum | 0 .73 RPM | 6 .69 RPM |
SRP007412_heart | 0 .00 RPM | 1 .38 RPM |
SRP007412_kidney | 0 .07 RPM | 2 .85 RPM |
SRP007412_liver | 0 .00 RPM | 2 .11 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_365 |
Pan troglodytes | retro_ptro_286 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000013492 | 1 retrocopy | |
Homo sapiens | ENSG00000100483 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000004994 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005798 | 1 retrocopy |
retro_pabe_337 ,
|
Pongo abelii | ENSPPYG00000013116 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006327 | 1 retrocopy |