>retro_pabe_683
ATGGCTCACCTCCGGGGATTTGCCAACCAGCACTCTCGAGTGGACCCTGAAGAGCTCTTCACCAAGCTCGACCGCATTGG
CAAGGGCTCCTTTGGTGAGGTCTACAAGGGCATCGATAACCACACGAAGGAGGTGGTGGCCCTCAAGATCATCGACCTGG
AGGAGGCCGAGGATGAGATCGAGGACATCCAGCAGGAGATCACCGTCCTCAGCCAGTGCGACAGCCCCTACATCACCCGC
TACTTTGGCTCCTACCTAAAGAGCACCAAGTATGGATCATCATGGAATACCTGGGTGGCGGCTCAGCACTGGACTTGCTT
AAACCAGGTCCCCTGGAGGAGACGTACATTGCCACGATCCTGCGGGAGATTCTGAAGGGCCTGGATTATCTGCACTCCGA
ACGCAAGATCCACCCAGACATCAAAGCTGCCAACGTGCTACTCTCGGAGCAGGGGGACGTGAAGCTGGCGGACTTTGGGG
TAGCAGGGCAGCTCACAGACACGCAGATTAAGAGGAACACATTCGTGGGCACCCCCTTCTGGATGGCGCCTGAGGTCATC
AAGCAGTCGGCCTACAACTTCAAGGCTGACATCTGGTCCCTGGGGATCACGGCCATCGAGCTGGCCAAGGGGGAGCCTCC
AAACTCTGACCTCCACCCCATGTGCGTCCTGTTCCTGATTCCCAAGAACAGCCCACCCACACTGGAGGGCCAGCACAGCA
AGCCCTTCAAGGAGGTCGTGGAGGCCTGCCTCAACAAAGACCCCCGATTTCGGCCCACGGCCAAGGAGCTCCTGAAGCAC
AAGTTCATCACATGCTACACCAAGAAGACCTCCTTCCTCACGGAGCTCATCGACCGCTATAAGCGCTGGAAGTCAGAGGG
GCATGGCGAGGAGTCCAGCTCTGAGGACTCTGACATTGATGGCGAGGCGGAGGACGGGGAGCAGGGCCCCATCTGGACGT
TCCCCCCTACCATCCGGCCGAGTCCACACAGCAAGCTTCACAAGGGGACGGCCCTGCACAGCTCATAGAAGCCTGTGGAG
CCCGTCAAGAGGCAGCTGAGGTCCCAGTGCCTGTCCACGCTGGTCCGGCCCGTCTTGGGAGAGCTCAAAGAGAAGCACAA
GCAGAGCGGCAGGAGTGTGGGTGCGCTGGAGGAGCTGGAGAATGCCTTCAGCCTGGCTGAGGAGTCCTGCCCCGGCATCT
CAGACAAGCTGATGGTGCACCTGGTGGAGCGAGTGCAGAGGTTTTCACACAACAGAAACCACCTGACATCCACC
ORF - retro_pabe_683 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
96.71 % |
Parental protein coverage: |
99.77 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MAHLRGFANQHSRVDPEELFTKLDRIGKGSFGEVYKGIDNHTKEVVAIKIIDLEEAEDEIEDIQQEITVL |
| MAHLRGFANQHSRVDPEELFTKLDRIGKGSFGEVYKGIDNHTKEVVA.KIIDLEEAEDEIEDIQQEITVL |
Retrocopy | MAHLRGFANQHSRVDPEELFTKLDRIGKGSFGEVYKGIDNHTKEVVALKIIDLEEAEDEIEDIQQEITVL |
|
Parental | SQCDSPYITRYFGSYLKSTK-LWIIMEYLGGGSALDLLKPGPLEETYIATILREILKGLDYLHSERKIHR |
| SQCDSPYITRYFGSYLKSTK..WIIMEYLGGGSALDLLKPGPLEETYIATILREILKGLDYLHSERKIH. |
Retrocopy | SQCDSPYITRYFGSYLKSTK<VWIIMEYLGGGSALDLLKPGPLEETYIATILREILKGLDYLHSERKIHP |
|
Parental | DIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELA |
| DIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAY.FKADIWSLGITAIELA |
Retrocopy | DIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYNFKADIWSLGITAIELA |
|
Parental | KGEPPNSDLHPMRVLFLIPKNSPPTLEGQHSKPFKEFVEACLNKDPRFRPTAKELLKHKFITRYTKKTSF |
| KGEPPNSDLHPM.VLFLIPKNSPPTLEGQHSKPFKE.VEACLNKDPRFRPTAKELLKHKFIT.YTKKTSF |
Retrocopy | KGEPPNSDLHPMCVLFLIPKNSPPTLEGQHSKPFKEVVEACLNKDPRFRPTAKELLKHKFITCYTKKTSF |
|
Parental | LTELIDRYKRWKSEGHGEESSSEDSDIDGEAEDGEQGPIWTFPPTIRPSPHSKLHKGTALHGSQKPAEPV |
| LTELIDRYKRWKSEGHGEESSSEDSDIDGEAEDGEQGPIWTFPPTIRPSPHSKLHKGTALH.S.KP.EPV |
Retrocopy | LTELIDRYKRWKSEGHGEESSSEDSDIDGEAEDGEQGPIWTFPPTIRPSPHSKLHKGTALHSS*KPVEPV |
|
Parental | KRQPRSQCLSTLVRPVFGELKEKHKQSGGSVGALEELENAFSLAEESCPGISDKLMVHLVERVQRFSHNR |
| KRQ.RSQCLSTLVRPV.GELKEKHKQSG.SVGALEELENAFSLAEESCPGISDKLMVHLVERVQRFSHNR |
Retrocopy | KRQLRSQCLSTLVRPVLGELKEKHKQSGRSVGALEELENAFSLAEESCPGISDKLMVHLVERVQRFSHNR |
|
Parental | NHLTST |
| NHLTST |
Retrocopy | NHLTST |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .50 RPM |
80 .17 RPM |
SRP007412_cerebellum |
0 .12 RPM |
72 .47 RPM |
SRP007412_heart |
0 .06 RPM |
26 .61 RPM |
SRP007412_kidney |
0 .10 RPM |
64 .37 RPM |
SRP007412_liver |
0 .09 RPM |
34 .86 RPM |
Pongo abelii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_pabe_683 retrocopy.
Pongo abelii was not studied using FANTOM5 data.
retro_pabe_683 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_pabe_683 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
7 retrocopies.