RetrogeneDB ID: | retro_pcap_239 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_204577:7..636(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PGRMC2 | ||
Ensembl ID: | ENSPCAG00000002433 | ||
Aliases: | None | ||
Description: | progesterone receptor membrane component 2 [Source:HGNC Symbol;Acc:16089] |
Percent Identity: | 70.09 % |
Parental protein coverage: | 85.43 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | RWRAVMAAGDGDVKLGTLGSGSDSSSDGSSEIPGGAGATAEEGGWAAAALALLTGGGEMLLNVVLVALVL |
RW....A.GDGDVKL.TLGSGS.SS.D..S..PGGAGA.AEEG.WAA..L.LLT.GGEM.L.VVLVAL.L | |
Retrocopy | RW-VMIAVGDGDVKLVTLGSGSNSSGDEGSHSPGGAGAAAEEGSWAAVVLTLLTNGGEMQLYVVLVALGL |
Parental | -LGAYRLWMRWGRRGLGAGAGAGEESPAASLPRMKKRDFSLEQLRQYDGSNNPRILLAVNGK-VFDVTKG |
..GA.RL..RW......A.AG...ESPA.SLP.MKK.D..LEQLRQ...S.N..IL.AVNGK.VFDVT.G | |
Retrocopy | <VGA*RL*VRWRLQDISAQAGVDKESPATSLPHMKKWDLGLEQLRQCEESKNLCILYAVNGK<VFDVTEG |
Parental | SKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQ-FKEKYDYVGRLLK |
SK.YGP.GPYGI.AGRDASRGL..FCLDK.ALRDEYDD.SD.NAVQ.ESVRE...Q..KEKYDYVGRLLK | |
Retrocopy | SKVYGPGGPYGICAGRDASRGLVMFCLDKNALRDEYDDVSDSNAVQTESVRE*KLQ>IKEKYDYVGRLLK |
Parental | PGEE |
PGEE | |
Retrocopy | PGEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000003328 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026492 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000002433 | 1 retrocopy |
retro_pcap_239 ,
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