>retro_pcap_406
TCAAATTGTGTCTTTAACCTTATGCCTAATAAACAACAAGTGCTGCAAGAGTATATCAAGTATTGAAGCATGGTGGGAGC
TGTATTTCAGTCACATCTGTACTATCCTTGAAATGTCAGAAGAAATCATGAAACACAAAGTTTTATGGGGTGAGTGCCTC
AGTGGTGCTTTGTACTGGAAAGACCTTGCCATCCTTGCCCAGAAAAGTGGATTCTGCCACTTCCACACTTGGTCCCTGCC
AACCTGATTATGATACAGAACAAGGAAATAGAAAGAGTTGTTGGTGACAGTAGTTTTGTTTCTGCAACATTTCACCTTTT
CAAAGTCCCTAAGACAGGAACTGTCCCCAAGAAGTCAGGCTGTTCACAACGGAGGAATCACAGAACATGAAAAGGAACTA
ATATTTGATGCAAATTTCACATTTAAGGAAGGTGACCTCGTTGAAGTACATGATGAAACTGCAGCTATCTTGAAGAATTC
ACGATTTGCCCAAGATTTTCTTGATTACACGAATTAGAGAGAGGTGGCCATAATCTGGAAGTTATTCTGCTTTAGCATCA
AAGGATATCATCACAGATCCATTCAAACTTGCAGAAGACTCTCACAGCACCGAGTCCAGATGTCTCCCTGATGCTGCCGG
AGACTGCTGTTCTCCAAGGGAAAGGTGC
ORF - retro_pcap_406 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
64.91 % |
Parental protein coverage: |
57.6 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
6 |
Retrocopy - Parental Gene Alignment:
Parental | SNCVINLVPDKQQVLQE-AYRVLKHGG-ELYFSDVYGSLEMPEEIREQKALWGE-LGGALYW-KGLGILA |
| SNCV.NL.P.KQQVLQE..Y.VLKHGG.ELYFS.....LEM.EEI...K.LWGE.L.GALYW.K.L..L. |
Retrocopy | SNCVFNLMPNKQQVLQE<VYQVLKHGG<ELYFSHICTILEMSEEIMKHKVLWGECLSGALYW>KTLPSLP |
|
Parental | QKIGFCR-PRLVTANVITIQNKEI--LVGDCRFVSATFRLFKLPKTGP-ATRSQVVYDGGIMGHEKELIF |
| .K......P.LV.AN.I.IQNKEI...VGD..FVSATF.LFK.PKTG....RSQ.V..GGI..HEKELIF |
Retrocopy | RKVDSAT>PHLVPANLIMIQNKEIERVVGDSSFVSATFHLFKVPKTGT>SPRSQAVHNGGITEHEKELIF |
|
Parental | DANFTFTE---VEVDEETAAILKNSRFAQDFL-IKPVRERLPLSGSCSALESKDFISDPFKLAEDSHNTK |
| DANFTF.E...VEV..ETAAILKNSRFAQDFL.I...RER.P.SGS.SAL.SKD.I.DPFKLAEDSH.T. |
Retrocopy | DANFTFKEGDLVEVHDETAAILKNSRFAQDFL>ITRIRERWP*SGSYSALASKDIITDPFKLAEDSHSTE |
|
Parental | SRCSLGVAGGCWGTKKSC |
| SRC....AG.C......C |
Retrocopy | SRCLPDAAGDCCSPRERC |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Procavia capensis was not studied using RNA-Seq expression data.
Procavia capensis was not studied using ChIP-Seq data.
Procavia capensis was not studied using EST data.
Procavia capensis was not studied using FANTOM5 data.
retro_pcap_406 was not experimentally validated.
Retrocopy orthology:
Procavia capensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.