RetrogeneDB ID: | retro_ppat_24 | ||
Retrocopy location | Organism: | Moss (Physcomitrella patens) | |
| Coordinates: | DS544914.1:1841269..1841542(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | PP1S19_83V6 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_ppat_24
ATGAGAAAAGAAATTGAGAAGAAATTAGTATTAATTTGTGAGCATAGCTTTAAAGAAATTGTTACTCTACAATTGAGTCT
AAGTAAAGTTATTTTGAGTGATTTTCATTGAAAACTTGATCTACAATTAATTGTGACTACTAAAATATTGGATGCAATGA
GTGGCATAGATATCTTCCTATTTAGAAAGCTCTTACTATGGTTTTATCCTTATTTCATAAAGCTTGTCTGCAATGACCAA
ATGAAAGTGAAGAAGGTATTAGGAGAATTCTTT
ORF - retro_ppat_24 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 51.65 % |
| Parental protein coverage: | 57.23 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LREEGERQLVSFCGHVLKEVAALQPGLSEAVLSDFHRALDLRSAVTAEVLKAMRDMDTLLFKKHLPEFYP |
| .R.E.E..LV..C.H..KE...LQ..LS...LSDFH..LDL...VT...L.AM...D..LF.K.L..FYP | |
| Retrocopy | MRKEIEKKLVLICEHSFKEIVTLQLSLSKVILSDFH*KLDLQLIVTTKILDAMSGIDIFLFRKLLLWFYP |
| Parental | YFTKLICSDQMDVRKALGKLF |
| YF.KL.C.DQM.V.K.LG..F | |
| Retrocopy | YFIKLVCNDQMKVKKVLGEFF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Physcomitrella patens was not studied using RNA-Seq expression data.
Physcomitrella patens was not studied using ChIP-Seq data.
Physcomitrella patens was not studied using EST data.
Physcomitrella patens was not studied using FANTOM5 data.
retro_ppat_24 was not experimentally validated.
Retrocopy orthology:
Physcomitrella patens does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Physcomitrella patens | PP1S19_83V6 | 1 retrocopy |
retro_ppat_24 ,
|