>retro_pper_28
ATGGTTGAACTAGACGTCCAGATCCCAACTGCTTTTGACCCGTTCGCCGAAGCCAAAGACGCGGATGCCCCCGGAGCCAA
GGAGTATGTGCATATCCGGGTGCAGCAGAGAAATGGAAAGAAGTGCCTGACAACAGTTCAAGGGCTGAAGAAAGACTTCA
GCTACGAGAAGATCCTTAAGGATCTGAAAAAAGAGTTCTGCTGCAACGGCAATGTTGTCCAGGACAAAGAGCTTGGCAAG
ATAATTCAGCTCCAAGGTGATCAACGCAAGAACGTGCTTCAGTTTCTTGTTCAGGCCAAGATTGTGAAGAAGGAGCAGAT
AAAGATGCATGGTTTTTGA
ORF - retro_pper_28 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
79.65 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MSELDVQIPTAFDPFAEANAEDSGAGTKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN |
| M.ELDVQIPTAFDPFAEA...D...G.KEYVHIR.QQRNG.K.LTTVQGLKK.FSY.KILKDLKKEFCCN |
Retrocopy | MVELDVQIPTAFDPFAEAKDADA-PGAKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDLKKEFCCN |
|
Parental | GTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKDNIKIHGF |
| G.VVQD.ELG..IQLQGDQRKNV..FLVQA.IVKK..IK.HGF |
Retrocopy | GNVVQDKELGKIIQLQGDQRKNVLQFLVQAKIVKKEQIKMHGF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Prunus persica was not studied using RNA-Seq expression data.
Prunus persica was not studied using ChIP-Seq data.
Prunus persica was not studied using EST data.
Prunus persica was not studied using FANTOM5 data.
retro_pper_28 was not experimentally validated.
Retrocopy orthology:
Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.