>retro_pper_34
ATGAGGTCTTCATATACCTTGGGGTCACAGTCTAGGTGCCCTCTTGAAGAACGGCTTCTTCAGAAAAAGAATTCTCGGGA
AAATTTGGACAGGTTCATACCAAATAGGTCTGCAATGGATTTTGATTTTGCTCATTACATGCTTACTCAAGGTAGGAAAG
GTAAGGAAAACCCATCTAGATATGGAAGAGACTATAGGAAGCAGTTGGCAGAGGCTATGAACATGAATCGCACTAGAATC
CTCGCTTTCAAGAACAAGCCTCCTGCCCCTGTAGAGCTTTTCCCGAGCTACTTCTCTTCTTTGCCACAGGATAAACCGGC
AAACCCTAAGCCACACAGACACATTCCTCAAACTTCAGAGAGAACACTGGATGCTCCTGACCTTATTGATGATTACTACC
TGAATTTGTTGGATTGGGGAAGCTCCAATGTTATTGCAATAGCTCTTGCAAACACAGTTTATTTGTGGGATGCTACTGAT
TGTTCTACTTCGGAACTGGCCAGATTTGATGTTGAAAGGGGACCTGTTACCAGTGTCAGTTGGGCTATTGATGGACGCCA
CATTGCCATTGGACTGGACAATTCCGAAGTACAGCTATGGGATTCAACTGCAAAGCAGTATCTGAGAACCTTGAGAGGTT
GTCACAGATCACGGGTAGGCTCACTAGCATGGAACAATCACATTCTTACAACTGGAGGAATGGATGGCCGCATTGTAAAC
AATGATGTAAGAATTAGATCGCACATTGTTGAGACGTACAGAGGACATGAACGCGAGGTTTGTCGGCTTAAGTGGTCAGC
CTCAGGGCAGCAATTAGCAAGTGGAGGAAATGATAACCTGCTCCATATATGGGACAACAGATCAGTGGCACCAACACAGT
GGCTTCACAGGCTTGAAGACCATACAGCTGCTGTAAAAGCCCTTGCTTGGTGTCCTTTCCAGAGAAATTTGCTTGCTTCT
GGTGGAGGTGGGAATGATCGGTGCATAAAGTTCTGGAACACTCACACAGGTGCTTGCCTGAACTCGGTGGACACTGGCTC
TCAGGTTTGTGCTTTGCTGTGGAATATGAATGAACGAGAACTGCTTAGCTCACATGGGTTTACTCAGAATCAGCTTACTC
TTTGGAAATATCCATCAATGGTTAGAATTGCAGAACTCACGGGTCATACGTCTAGAGTCCTTCATATGGCTCAGAGCCCA
AATGGTTGCACAGTAGCATCAGCAGGTGGTGAAACACTGAAATTATGGAATGTTTTTGGGGACCCTGAGGAGGTTAAACC
AGCTCCACGACCTCCCAAAGAGCCTTTTGCCCAAGTGAGTCGTATCCGCTGA
ORF - retro_pper_34 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
83.63 % |
Parental protein coverage: |
98.9 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MSSSSILKSDSRCPLREPFLQKRNSRENLDRFIPNRSAMDFDFAHFMLTEGRKGKENPAMVSSPSREAYR |
| M.SS..L.S.SRCPL.E..LQK.NSRENLDRFIPNRSAMDFDFAH.MLT....G.......S...R..YR |
Retrocopy | MRSSYTLGSQSRCPLEERLLQKKNSRENLDRFIPNRSAMDFDFAHYMLTQ---GRKGKENPSRYGRD-YR |
|
Parental | KQLAEAMNMNRTRILAFKNKPPAPVELFPREFSSLPQDKPA--KPRRHIPQTSERTLDAPDLVDDYYLNL |
| KQLAEAMNMNRTRILAFKNKPPAPVELFP..FSSLPQDKPA..KP.RHIPQTSERTLDAPDL.DDYYLNL |
Retrocopy | KQLAEAMNMNRTRILAFKNKPPAPVELFPSYFSSLPQDKPANPKPHRHIPQTSERTLDAPDLIDDYYLNL |
|
Parental | LDWGSCNVLAIALANTVYLWDATNGSTSELATFEDEVGPVTSVSWAPDGRHIAIGLDNSEVQLWDSTANK |
| LDWGS.NV.AIALANTVYLWDAT..STSELA.F..E.GPVTSVSWA.DGRHIAIGLDNSEVQLWDSTA.. |
Retrocopy | LDWGSSNVIAIALANTVYLWDATDCSTSELARFDVERGPVTSVSWAIDGRHIAIGLDNSEVQLWDSTAKQ |
|
Parental | QLRTLRGCHRSRVGSLAWNNHILTTGGMDGCIVNNDVRVRSHIVETYRGHEQEVCGLKWSASGQQLASGG |
| .LRTLRGCHRSRVGSLAWNNHILTTGGMDG.IVNNDVR.RSHIVETYRGHE.EVC.LKWSASGQQLASGG |
Retrocopy | YLRTLRGCHRSRVGSLAWNNHILTTGGMDGRIVNNDVRIRSHIVETYRGHEREVCRLKWSASGQQLASGG |
|
Parental | NDNLLHIWD-RSVASSNSPTQWLHRLEDHTAAVKALAWCPFQGNLLASGGGGGDRCIKFWNTHTGACLNS |
| NDNLLHIWD.RSVA....PTQWLHRLEDHTAAVKALAWCPFQ.NLLASGGGG.DRCIKFWNTHTGACLNS |
Retrocopy | NDNLLHIWDNRSVA----PTQWLHRLEDHTAAVKALAWCPFQRNLLASGGGGNDRCIKFWNTHTGACLNS |
|
Parental | VDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMAKIAELTGHTSRVLYMAQSPDGCTVASAAGDE |
| VDTGSQVCALLWN.NERELLSSHGFTQNQLTLWKYPSM..IAELTGHTSRVL.MAQSP.GCTVASA.G.E |
Retrocopy | VDTGSQVCALLWNMNERELLSSHGFTQNQLTLWKYPSMVRIAELTGHTSRVLHMAQSPNGCTVASAGG-E |
|
Parental | TLRFWNVFGVPEVAKPAPKSNPEPFAHLNRIR |
| TL..WNVFG.PE..KPAP....EPFA...RIR |
Retrocopy | TLKLWNVFGDPEEVKPAPRPPKEPFAQVSRIR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Prunus persica was not studied using RNA-Seq expression data.
Prunus persica was not studied using ChIP-Seq data.
Prunus persica was not studied using EST data.
Prunus persica was not studied using FANTOM5 data.
retro_pper_34 was not experimentally validated.
Retrocopy orthology:
Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.