>retro_pper_51
ATGGGAAGCAACCAAGCTGCCGTGTCCTTCCTCACCAACCTCGCTCGTGCCGCCTTCGGGCTCGGCGCCGGCGCCACCAT
CGTCAACTCCTCGCTCTACACCGTCGACGGCGGTCAGCGCGCCGTGCTCTTCGACCGTTTCCGTGGAGTCATCGACGACA
CCGTCGGCGAGGGGACCCATTTTCTGATCCCGTGGCTCCAGAAGCCCTACATCTTCGACATCCGTACCCGGCCCCACACC
TTCTCTTCGGTCTCCGGCACCAAGGATCTGCAGATGGTGAACCTCACCCTCAGGGTCCTCTCGCGTCCCGAGGTGTCCCG
CCTCCCTGAGATCTTCAAAACCCTAGGGCTCGAGTACGACGAGAAGGTCCTCCCCTCCATCGGAAACGAGGTGCTGAAGG
CCGTCGTAGCCCAATTCAATGCCGATCAGCTTCTGACGGAGCGTCCTCACGTGTCGGCTTTGGTGCGTGAGAGCTTGATC
CGCCGTGCTAAGGACTTCAACATCGTGCTGGATGACGTGGCGATTACGCACTTGTCGTACGGGATGGAGTTCTCGCGTGC
CGTTGAACAGAAGCAGGTGGCCCAGCAGGAGGCGGAGCGCTCCAAGTTTGTGGTGGCGAAGACGGAGCAGGAGAGGCGCG
CCGCGATTATTCGAGCCCAGGGTGAGAGCGAGGCTGCCAAGCTCATCTCTGACGCGACTGCGTCTGCGGGTCTGGGACTG
ATCGAGCTCAGAAGGATCGAGGCCTCCAGGGAGGTTGCTGCCACGCTTGCCAGGTCGCCCAATGTGTCTTACCTGCCTGG
TGGGAAGAACATGCTCTTTGCTCTCAACCCTCGTTGA
ORF - retro_pper_51 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
54.51 % |
Parental protein coverage: |
83.79 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | GLGLYGVANSIYNVEGGHRAIVFNRIIGVKDKVYPEGTHLIIPWFERPVIYDVRARPHLVESTSGSRDLQ |
| G.G...V..S.Y.V.GG.RA..F.R..GV.D....EGTH..IPW...P.I.D.R.RPH...S.SG..DLQ |
Retrocopy | GAGATIVNSSLYTVDGGQRAVLFDRFRGVIDDTVGEGTHFLIPWLQKPYIFDIRTRPHTFSSVSGTKDLQ |
|
Parental | MVKIGLRVLTRPVPDQLPTVYRTLGENYNERVLPSIVHETLKAVVAQYNASQLITQRETVSREIRKILTE |
| MV...LRVL.RP....LP....TLG..Y.E.VLPSI..E.LKAVVAQ.NA.QL.T.R..VS...R..L.. |
Retrocopy | MVNLTLRVLSRPEVSRLPEIFKTLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIR |
|
Parental | RAANFNIALDDVSITTLTFGKEFTAAIEAKQVAAQEAERAKFVVDKAEQDKKSAIIRAEGEATSAKLIGE |
| RA..FNI.LDDV.IT.L..G.EF..A.E.KQVA.QEAER.KFVV.K.EQ....AIIRA.GE...AKLI.. |
Retrocopy | RAKDFNIVLDDVAITHLSYGMEFSRAVEQKQVAQQEAERSKFVVAKTEQERRAAIIRAQGESEAAKLISD |
|
Parental | AIAN-NPAFITLRKIEAAREIAHTISNSSNKVYL |
| A.A......I.LR.IEA.RE.A.T...S.N..YL |
Retrocopy | ATASAGLGLIELRRIEASREVAATLARSPNVSYL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Prunus persica was not studied using RNA-Seq expression data.
Prunus persica was not studied using ChIP-Seq data.
Prunus persica was not studied using EST data.
Prunus persica was not studied using FANTOM5 data.
retro_pper_51 was not experimentally validated.
Retrocopy orthology:
Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.