>retro_pper_57
CTTACCATCACAGCACCTGATGAGAGCAGAAACACAGATGGAATCCATATCGGGGCTTCAACTAGTATCAACATTACTCA
TGCAAAGATTGGAACTGGGGATGACTGTGCTTCTATTGGTGATGACTCCCACCAAATCACAGTGACTGATGTTACTTGTG
GGCCAGGCCATGGAATAAGCATTGGAAGCCTTGGAAGATATAAGGAAGAAAAGGATGTGACCGGGATCATAGTTAAGAAC
TGCACCCTAACTAATACGCAAAACGATGTGAGAATCAAAACATGGCCAGATTCTCCTTCGCCTAGCACTGCCTCAGATAT
ACACTATGAGGATATTACTATGGTTAATGTTAGTAAACCTATCCTCATAGACCAATTGTACTGCCCATATACTCGGTGTG
ACCAAAAGCCTCCGTCAAAAGTTAAGATCAGCAATGTCAGCTTCAAGAACATTAGGGGCTCATCTTTCACTCCACTTGCA
GTCAAGCTTGTATGTACCAGGGGCATACCGTGTGAGAATGTGGAGTTGACTAACATTGATCTCACCTACGGTGGAGACCA
AGGCCCTCTTACCTCTCTATGTTCTAATGTCAAGCCCAGAATTACT
ORF - retro_pper_57 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
52.97 % |
Parental protein coverage: |
52.2 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | LKISAPETSPNTDGIHIERSSSVYFSLSHIATGDDCISVGQGNSQITITSITCGPGHGISVGSLGKYPDE |
| L.I.AP..S.NTDGIHI..S.S.......I.TGDDC.S.G....QIT.T..TCGPGHGIS.GSLG.Y..E |
Retrocopy | LTITAPDESRNTDGIHIGASTSINITHAKIGTGDDCASIGDDSHQITVTDVTCGPGHGISIGSLGRYKEE |
|
Parental | RDVSGLVVKDCTMTGTTNGIRIKTWANSPGNSAATNMTFENIVMNNVTNPIIIDQLYCPFTSCTSKAPSR |
| .DV.G..VK.CT.T.T.N..RIKTW..SP..S.A.....E.I.M.NV..PI.IDQLYCP.T.C..K.PS. |
Retrocopy | KDVTGIIVKNCTLTNTQNDVRIKTWPDSPSPSTASDIHYEDITMVNVSKPILIDQLYCPYTRCDQKPPSK |
|
Parental | VKLSDIYFKNIRGTSSSEVAVALECSKGIPCQNIYLEDVHLDLSSGEKQATSSCSNVKAKFS |
| VK.S...FKNIRG.S....AV.L.C..GIPC.N..L....L.........TS.CSNVK.... |
Retrocopy | VKISNVSFKNIRGSSFTPLAVKLVCTRGIPCENVELTNIDLTYGGDQGPLTSLCSNVKPRIT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Prunus persica was not studied using RNA-Seq expression data.
Prunus persica was not studied using ChIP-Seq data.
Prunus persica was not studied using EST data.
Prunus persica was not studied using FANTOM5 data.
retro_pper_57 was not experimentally validated.
Retrocopy orthology:
Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.