>retro_pper_69
ATGAACCCAGGTGGGATCGGAGTGCATAAGGAGGATCTGGTGGGTATGGAGGATGATAAACTCACAATAGAGGATGATGA
TTTTGAAGTCTTAGAGGGTACTCGTGGTCTTTGCATACGCTTTTGCACCAAGGTGAAGGAACGACTCTACCGTCCCTGGC
GGAATGCAATTATAATCAAACTAATGGGCAGGACCCATACATACAACTTCCTATTAGCTCGTCTAAGACAAAAATGGAGT
CTTTTGAAAGGTGCAATGAGTTTGATTGACCTGGAAAACAACTTCTATGTTGTACGCTTTGTGCTTGAGGAAGACATGAG
GTACGTTTTTTCTGGGGGACCATGGGTAATTGCTGGGCAATCTTTAGTGATGCAGAGATGGAAACTAGGATTTGATCCTA
ATGAAGCTACTATTACTCGTATGGCTGTGCGGGTGAGTATTACAAGTTTACATGTTGAATGGTTTAATCCTGAGGCAATT
AAACGTATTGGGGACCTTATTGGTGTGACTTATCGCATTGATACTCACACAGTTGCTCAAGCCCGTGGCAAATATGCTCG
AATATGTATTGAACTGGATTTGACCAAACCGTTAATTGCTAATGTGCAAGTTGAGAATAATTGGTATGCCATAGAATATG
AAGGACTCCATTTGGTCTGCTTTGGCTGTGGTATTTATGGCCATAATAGAAACCAATGTCCATATGAAATTAGAGTCCAT
GATGGT
ORF - retro_pper_69 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
90.08 % |
Parental protein coverage: |
95.56 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MNPGGIGVHKEDLVGMEEDKLTIEDDDFLVSEGTRGPCIRFCTKVKERLYRPWRNAIIIKLMGRTHTYSF |
| MNPGGIGVHKEDLVGME.DKLTIEDDDF.V.EGTRG.CIRFCTKVKERLYRPWRNAIIIKLMGRTHTY.F |
Retrocopy | MNPGGIGVHKEDLVGMEDDKLTIEDDDFEVLEGTRGLCIRFCTKVKERLYRPWRNAIIIKLMGRTHTYNF |
|
Parental | LLARLRQKWSLLKGAMSLIDLENNFYVVRFVLEDDMRYVFSREPWVIAGQSLVMQRWKLGFDHN-STITR |
| LLARLRQKWSLLKGAMSLIDLENNFYVVRFVLE.DMRYVFS..PWVIAGQSLVMQRWKLGFD.N..TITR |
Retrocopy | LLARLRQKWSLLKGAMSLIDLENNFYVVRFVLEEDMRYVFSGGPWVIAGQSLVMQRWKLGFDPNEATITR |
|
Parental | MAVWVRITGLHVEWFNPEAIKRIGDLIGVTYRIDTLTVAQARGKYSRICIELDLTKPLIANVQVEVKKY- |
| MAV.V.IT.LHVEWFNPEAIKRIGDLIGVTYRIDT.TVAQARGKY.RICIELDLTKPLIANVQVE...Y. |
Retrocopy | MAVRVSITSLHVEWFNPEAIKRIGDLIGVTYRIDTHTVAQARGKYARICIELDLTKPLIANVQVENNWYA |
|
Parental | ---EGLHLVCFGCGIYGHNRNQCPSEIRVHDG |
| ...EGLHLVCFGCGIYGHNRNQCP.EIRVHDG |
Retrocopy | IEYEGLHLVCFGCGIYGHNRNQCPYEIRVHDG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Prunus persica was not studied using RNA-Seq expression data.
Prunus persica was not studied using ChIP-Seq data.
Prunus persica was not studied using EST data.
Prunus persica was not studied using FANTOM5 data.
retro_pper_69 was not experimentally validated.
Retrocopy orthology:
Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
2 retrocopies.