RetrogeneDB ID:

retro_pper_70

Retrocopy
location
Organism:Peach (Prunus persica)
Coordinates:scaffold_7:21595774..21595964(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:PRUPE_ppa013859mg
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_pper_70
AATCCCTACCTGTGGCAGCTCTCCAATCAGTTCAACTGGCAGCACGTCAAAGCAAAATGTTATTTGAGCAGTATCACTTG
GAAAAAAGGCCATCAAGAAAGGGGAGCCCTATAAATTTAAGTGCAACAAGAAGTACATGGAGAAGGACTACCCCAAGTGT
TACATTGTTGTTCATTTTGCATTCTTTCCT

ORF - retro_pper_70 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 57.81 %
Parental protein coverage: 60.61 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalNPYMWQLSNQFNW-HDKAMCF-EQYHW-KKAMKKGEPYKFKWN-QYMDKDLRDSYYFNWPVYFP
NPY.WQLSNQFNW.H.KA.C......W.KKA.KKGEPYKFK.N..YM.KD....Y.......FP
RetrocopyNPYLWQLSNQFNWQHVKAKCYLSSITW>KKAIKKGEPYKFKCNKKYMEKDYPKCYIVVHFAFFP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Prunus persica was not studied using RNA-Seq expression data.
Prunus persica was not studied using ChIP-Seq data.
Prunus persica was not studied using EST data.
Prunus persica was not studied using FANTOM5 data.
retro_pper_70 was not experimentally validated.

Retrocopy orthology:
Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Prunus persica PRUPE_ppa013859mg 1 retrocopy
retro_pper_70 ,



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