>retro_pper_9
ATGGACTTCGAGCAGTTTTATCGTTGTTACTCTGTCTCCTCAATTGGCAAGCCACATGCGGAAAACGGTGATAAAATTAT
AATGCCGCCGTCGGCTCTCCATCGCCTTGTTTGGGGTCCACAGGTGGCCTACCCTATGCTGTTTCAGCTCAACAATCCCA
ATTCTGAATCTGGACGAGTTACTCATTGCGGGGTCTTGGAATTTGTTGCCGATGAGGGCTTTGTATTTTTACCATCTTGG
ATGATGCACAACCTGCTTTTACAAGAGGGTAACCTTGTTCATGTCAAAAGCCAAAGCCTTGGGAAGGGAACATATGTCAA
ACTGCAACCTCACACCAAGGACTTTCTTGATATCTCAAACCCTAAAGCCGCTCTGGAGACGGCGTTGAGGAGCTACTCTT
GTTTAACCATTGGTGACACTATCATGCTTCCTTATAACAGTAAGAAGTATTACATCAACATAATTGAAACAAAGCCCTCC
TCTGCAATCTGTATAGTTGATACCGACTGCGAGGTTGATTTTGCCCCTCCTCTTGATTATGTGGAGCCTGAAAAGAAGCC
AGCACCATCCACTCTGCCAACGAAGAGACCACAAGAAGTTGAAGAAGATGAACAAGAGACACCTGAAAAGATAGCAAAGT
TCAGTCCCTTTACTGGTTCAGCCAGACGATTGGATGGAGAACCGGTCTTGACACAATCCGTTGCACCTGCAGTTCCCTCT
CCTCCGGAACTCAGGCAGCGCCAACTGGAGAGTGAAAATGGAACCAACAAAAAGGGTTCTAAGTCATCAGCTTCTGCTTC
ACTTCAACATTCTGGAAAGCTTGTGTTTGGTTCAAATGTGAACCGGCCTGTGAATGCAATCCCAAAAGTTGCCCCAAACA
ACCGCAGCAGGCAAGAGCCCCCTCACAAGGCAGAAGAGCCAAAGTTGCAAGCATTCACAGGGAAGAAGTATACCCTGAAA
GGGTGA
ORF - retro_pper_9 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
72.46 % |
Parental protein coverage: |
90.4 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | FEQSYRCYPVSFIDKSHLEKGDKIIMPPSALDRLA-SLQIDYPMLFELNNPTVD--RVTHCGVLEFVADE |
| FEQ.YRCY.VS.I.K.H.E.GDKIIMPPSAL.RL....Q..YPMLF.LNNP.....RVTHCGVLEFVADE |
Retrocopy | FEQFYRCYSVSSIGKPHAENGDKIIMPPSALHRLVWGPQVAYPMLFQLNNPNSESGRVTHCGVLEFVADE |
|
Parental | GLIYLPYWMMENMLLQEGDICQVKNKSLVKGTYVKLQPHTKDFLDISNPKAILETTLRSYSCLTTGDTIM |
| G...LP.WMM.N.LLQEG....VK..SL.KGTYVKLQPHTKDFLDISNPKA.LET.LRSYSCLT.GDTIM |
Retrocopy | GFVFLPSWMMHNLLLQEGNLVHVKSQSLGKGTYVKLQPHTKDFLDISNPKAALETALRSYSCLTIGDTIM |
|
Parental | VPYNNKKYYINIVETKPSSAISIIETDCEVDFAPPLDYVEPE-KPAPITSSKKRLLEAEE---EPPEKIA |
| .PYN.KKYYINI.ETKPSSAI.I..TDCEVDFAPPLDYVEPE.KPAP.T...KR..E.EE...E.PEKIA |
Retrocopy | LPYNSKKYYINIIETKPSSAICIVDTDCEVDFAPPLDYVEPEKKPAPSTLPTKRPQEVEEDEQETPEKIA |
|
Parental | KFSPFTGSGKRLDGKP-LTQSIAQV--SSPILKQHQLKSENGT--KSSKSSTCAARQHSGKLVFGSNVNQ |
| KFSPFTGS..RLDG.P.LTQS.A....S.P.L.Q.QL.SENGT..K.SKSS..A..QHSGKLVFGSNVN. |
Retrocopy | KFSPFTGSARRLDGEPVLTQSVAPAVPSPPELRQRQLESENGTNKKGSKSSASASLQHSGKLVFGSNVNR |
|
Parental | PTNETPKVAPKN-SRQEPSQKAEDP |
| P.N..PKVAP.N.SRQEP..KAE.P |
Retrocopy | PVNAIPKVAPNNRSRQEPPHKAEEP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Prunus persica was not studied using RNA-Seq expression data.
Prunus persica was not studied using ChIP-Seq data.
Prunus persica was not studied using EST data.
Prunus persica was not studied using FANTOM5 data.
retro_pper_9 was not experimentally validated.
Retrocopy orthology:
Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.