RetrogeneDB ID: | retro_psin_23 | ||
Retrocopy location | Organism: | Chinese softshell turtle (Pelodiscus sinensis) | |
| Coordinates: | JH211391.1:210176..211112(-) | ||
| Located in intron of: | ENSPSIG00000006167 | ||
Retrocopy information | Ensembl ID: | ENSPSIG00000001219 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSPSIG00000015739 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_psin_23
ATGGACCAGCAGAACCTCACCACCACGGTGACTGAATTTATTTTCCTGGGCCTCACCCAGAATCATCAGCTGAAGTATTT
TCTCTTCTTCTTTTTCTTCATCATCTACATGACCACCTGGCTGGGGAATTTCACCATCATCATCACCGTAATCGCTGACC
ACCGGCTCCACACCCCCATGTACTTCCTATTGGCCAACTTGGCTTTCATGGATGTCAGTGACTCATCAGTCAATGCTCCC
AACTTGCTGTCGGGTCTCCTCTCTCTGCGTAAAACCGTCTCCTTTAACGAGTGCATCCTCCAGATGTTCTTCTTCCACTT
TATCGGGGGAGCAATGGCATTCTTCCTTGTGGGGATGGCCATCGATCGGTACGTGGCCATCTACAAGCCATTGAGATACT
TGATTATCATGAACCGGGACGTGTGTGTGGGGCTAGTGGCGATGGCATGGGTGGGTGGATTGGCTCACTCAGCTGTTCAG
ATGGGACTGCTCCTCCAGTTTCCGTTCTGTGGGCCAAATGTCCTGGACAATTTCTACTGTGACGTCCCCCAGGTGATCAA
ACTGGCCTGCGCGGACACCCACGTGGTTGAACTGCAGTTGGTTTTCAATGGCGGAGCGCTCCTCATAATACTGTTCATCA
GTCTGTTAATTTCCTACACCATCATCTTAATCAAGATCAGGACACACGTCACGGAAGGGAAGCACAAGGCTCTGTCCACC
TGTGGAACCCAGATTATCGTGGTGTGTATCCTATTTGTACCCAGCATCTTCATCTACGCTCGGCCCTTCAAAAAGTACAC
CCTGGACAAAGTGGCATCCGTCTTCTTCACGGTCATCCCCCAAATGCTGAACCCGATGATCTACACACTGAGAAATGCCG
AGATGAAGAAGGCCATCAGGCGGCAGATGAGGAGAATCCAGTGCTCACGGCAGAAA
ORF - retro_psin_23 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 66.67 % |
| Parental protein coverage: | 97.48 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MEQENRTTAVTEFVLLGLTQSPALQGILFVVFTVIYLTTWLGNVTIITAVISDPQLHTPMYFLLANLAFI |
| M.Q.N.TT.VTEF..LGLTQ...L...LF..F..IY.TTWLGN.TII..VI.D..LHTPMYFLLANLAF. | |
| Retrocopy | MDQQNLTTTVTEFIFLGLTQNHQLKYFLFFFFFIIYMTTWLGNFTIIITVIADHRLHTPMYFLLANLAFM |
| Parental | DVSDSTVSVPKLLSGLLSPRKTISFHECLLQMFFFHCIAGAMVFLLVVMAADRYVAIHKPLQYLTIMNRG |
| DVSDS.V..P.LLSGLLS.RKT.SF.EC.LQMFFFH.I.GAM.F.LV.MA.DRYVAI.KPL.YL.IMNR. | |
| Retrocopy | DVSDSSVNAPNLLSGLLSLRKTVSFNECILQMFFFHFIGGAMAFFLVGMAIDRYVAIYKPLRYLIIMNRD |
| Parental | VCVGLVAGTWLGGVAHSIVQIGLVLQLPFCGPNVLDNFYCDVPQVIKLACTDTYLFELLTVSHNGVIVIL |
| VCVGLVA..W.GG.AHS.VQ.GL.LQ.PFCGPNVLDNFYCDVPQVIKLAC.DT...EL..V...G...I. | |
| Retrocopy | VCVGLVAMAWVGGLAHSAVQMGLLLQFPFCGPNVLDNFYCDVPQVIKLACADTHVVELQLVFNGGALLII |
| Parental | IFLLLLMSYTVILLKIRMHLTEGKRKALSTCGTQITVVCLIFVPCIFVYARPFRKFPVDKVVSVLYTTHS |
| .F..LL.SYT.IL.KIR.H.TEGK.KALSTCGTQI.VVC..FVP.IF.YARPF.K...DKV.SV..T... | |
| Retrocopy | LFISLLISYTIILIKIRTHVTEGKHKALSTCGTQIIVVCILFVPSIFIYARPFKKYTLDKVASVFFT--- |
| Parental | IVTPMLNPLIYTLRNKDVKRAMKKALEHI |
| ....MLNP.IYTLRN...K.A.......I | |
| Retrocopy | VIPQMLNPMIYTLRNAEMKKAIRRQMRRI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Pelodiscus sinensis was not studied using RNA-Seq expression data.
Pelodiscus sinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_psin_23 retrocopy.
Pelodiscus sinensis was not studied using FANTOM5 data.
retro_psin_23 was not experimentally validated.
Retrocopy orthology:
Pelodiscus sinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Pelodiscus sinensis | ENSPSIG00000015739 | 1 retrocopy |
retro_psin_23 ,
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