RetrogeneDB ID: | retro_psin_27 | ||
Retrocopy location | Organism: | Chinese softshell turtle (Pelodiscus sinensis) | |
| Coordinates: | JH205199.1:645430..645742(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSPSIG00000006688 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_psin_27
CAGAGAGCACGAGGCAGCCCGTCTCCTTACTCTCCTCTGTCCCTCTTTCTCCCCTCAGAGATACACTTTGTTGACCGGCA
CCGAGAACAGCTCATCCAGCGAGTAACTTTGGTTGAGGGCATCCTGGACAAGCTGCTGGGCAGCGTGCTGGACCACGAGC
AGTACCAGACCATTCTCGCCGAGAGAACCAACCCCATGAGAATGCGGAAGCTCTACGAGTTCATGCTGAGCTGGAACAGG
TACTGCAAAGACCAGCTCTACAAGGCACTGGCGGACAAATGCAAGTTCCTCGTCGCAGACCTGGAAGGGAAA
ORF - retro_psin_27 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 55.56 % |
| Parental protein coverage: | 55.1 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | EKGRGSFPTPIWSGAGCWAPPALREHFVSRHRVELIQRVCMVDSIIDMLRGTVLDEEQYESIRAEKTNPE |
| ...RGS.P.P..S......P.....HFV.RHR..LIQRV..V..I.D.L.G.VLD.EQY..I.AE.TNP. | |
| Retrocopy | QRARGS-PSP-YSPLSLFLPSEI--HFVDRHREQLIQRVTLVEGILDKLLGSVLDHEQYQTILAERTNPM |
| Parental | KMRKLYEFMPSWNWDCKERLYQALKAKHKFLIAELERK |
| .MRKLYEFM.SWN..CK..LY.AL..K.KFL.A.LE.K | |
| Retrocopy | RMRKLYEFMLSWNRYCKDQLYKALADKCKFLVADLEGK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Pelodiscus sinensis was not studied using RNA-Seq expression data.
Pelodiscus sinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_psin_27 retrocopy.
Pelodiscus sinensis was not studied using FANTOM5 data.
retro_psin_27 was not experimentally validated.
Retrocopy orthology:
Pelodiscus sinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Pelodiscus sinensis | ENSPSIG00000006688 | 1 retrocopy |
retro_psin_27 ,
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