>retro_psin_3
AGGAAGGAGCTGGGTGTGCGGAGCGGAGCCATGCGAGAATACAAAGTGGTGGTGCTGGGCTCGGGCGGGGTGGGCAAATC
CGCCCTCACCGTGCAGTTCGTGACGGGCTCCTTCATCGAGAAGTATGACCCCACCATCGAAGATTTCTACCGCAAGGAGA
TCGAGGTGGATTCCTCCCCCTCGGTGCTGGAGATCCTGGACACCGCCGGCACTGAGCAGTTCGCCTCCATGCGGGACCTC
TATATCAAGAACGGGCAAGGGTTCATCCTGGTCTACAGCCTGGTCAACCAGCAGAGCTTCCAGGACATCAAGCCTATGCG
GGATCAGATCATCCGGGTGAAGAGGTACGAAAAGGTGCCCATGATCCTGGTGGGCAACAAGGTGGACTTGGAGGGCGAGA
GGGAGGTGTCGTATGGGGAAGGCAAAGCTCTGGCTGAGGAGTGGAGCTGCCCCTTCATGGAAACTTCAGCCAAAAACAAA
GCTTCAGTGGACGAACTGTTTGCAGAGATTGTCAGGCAGATGAACTACGCTTCCCAGCCCAACGGGGACGATCAGTGCTG
CTCGTCCTGCGTGATC
ORF - retro_psin_3 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
85.79 % |
Parental protein coverage: |
99.46 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDASPSVLEILDTAGTEQFASMRDL |
| MREYKVVVLGSGGVGKSALTVQFVTG.FIEKYDPTIEDFYRKEIEVD.SPSVLEILDTAGTEQFASMRDL |
Retrocopy | MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDL |
|
Parental | YIKNGQGFILVYSLVNQQSFQEEINPCRDGIKRWATYEKVPVILVGNKVDLESEREVSSNEGRALAEEWG |
| YIKNGQGFILVYSLVNQQSFQ..I.P.RD.I.R...YEKVP.ILVGNKVDLE.EREVS..EG.ALAEEW. |
Retrocopy | YIKNGQGFILVYSLVNQQSFQ-DIKPMRDQIIRVKRYEKVPMILVGNKVDLEGEREVSYGEGKALAEEWS |
|
Parental | CPFMETSAKSKTMVDELFAEIVRQMNYAAQPDKDDPCCSACNI |
| CPFMETSAK.K..VDELFAEIVRQMNYA.QP..DD.CCS.C.I |
Retrocopy | CPFMETSAKNKASVDELFAEIVRQMNYASQPNGDDQCCSSCVI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Pelodiscus sinensis was not studied using RNA-Seq expression data.
Pelodiscus sinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_psin_3 retrocopy.
Pelodiscus sinensis was not studied using FANTOM5 data.
retro_psin_3 was not experimentally validated.
Retrocopy orthology:
Pelodiscus sinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.