RetrogeneDB ID: | retro_ptro_2827 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 9:38394075..38394783(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMX2 | ||
Ensembl ID: | ENSPTRG00000033702 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.95 % |
Parental protein coverage: | 78.72 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | REVEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVANTILFFRLDIRMGLLYITLCIVFLMTCKPPL-- |
RE.EILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVAN.ILFFRLDIRMGLLYITLCIVFLMTCK..... | |
Retrocopy | REAEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVANAILFFRLDIRMGLLYITLCIVFLMTCKXXXXX |
Parental | -YMGPEYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYT |
.YMGPEYIKYFNDKTIDEELERD.RVTWIVEFFAN.SNDCQSFAPIYADLSLKYNCTGLNFG.VD.GRYT | |
Retrocopy | XYMGPEYIKYFNDKTIDEELERDNRVTWIVEFFAN*SNDCQSFAPIYADLSLKYNCTGLNFGTVDAGRYT |
Parental | HVSTRYKVSTSPLTKQLPTLILFQGGKEVMRRPQIDKKGRAVSWTFSEENVIREFNLNELYQRAKKLSKA |
.VSTRYKVSTSPLT.QLPTLILFQGGK.VMR.PQ.DKKGRAVSWTFSEENVIREFNLNELYQRAKKLSKA | |
Retrocopy | DVSTRYKVSTSPLTNQLPTLILFQGGKKVMRQPQTDKKGRAVSWTFSEENVIREFNLNELYQRAKKLSKA |
Parental | GDNIPEEQPVASTPTTVSDGENKKDK |
GD.IPEEQPVASTPTTVSDGE.KKDK | |
Retrocopy | GDDIPEEQPVASTPTTVSDGESKKDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 4 .56 RPM | 80 .51 RPM |
SRP007412_cerebellum | 5 .92 RPM | 67 .86 RPM |
SRP007412_heart | 2 .68 RPM | 39 .55 RPM |
SRP007412_kidney | 4 .05 RPM | 60 .23 RPM |
SRP007412_liver | 1 .87 RPM | 29 .23 RPM |
SRP007412_testis | 1 .69 RPM | 32 .98 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4158 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000035426 | 1 retrocopy | |
Homo sapiens | ENSG00000213593 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000020112 | 1 retrocopy | |
Mus musculus | ENSMUSG00000050043 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000033702 | 1 retrocopy |
retro_ptro_2827 ,
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