RetrogeneDB ID: | retro_ptro_3261 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | X:116599525..116600747(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | API5 | ||
Ensembl ID: | ENSPTRG00000003516 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.21 % |
Parental protein coverage: | 78.05 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | TGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLK |
TGE.....ADILTQLLQTDDSAEFNLVNNALLSIFKM.AKGTLGGLFSQILQGEDIVRERAIKFLSTKLK | |
Retrocopy | TGEIFLEWADILTQLLQTDDSAEFNLVNNALLSIFKMVAKGTLGGLFSQILQGEDIVRERAIKFLSTKLK |
Parental | TLPDEVLTKEVEELILTESKKVLEDVTGEEFVLF-MKILSGL-KSLQTVSGRQQLVELVAEQADLEQTFN |
TLPDEVLTKEV.ELI.TESKKVLEDVTGEEFVL..MKILSGL.K.L.TVSGR.QLVELVAEQADLEQTFN | |
Retrocopy | TLPDEVLTKEVKELI*TESKKVLEDVTGEEFVLL<MKILSGL<KKL-TVSGR*QLVELVAEQADLEQTFN |
Parental | PSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG |
PSDPDCV.RLLQCT.QAVPLFS...HSTRFVTYFCEQVLPNL.TLTTPVEGLDIQLEVLKLLAEMSSFCG | |
Retrocopy | PSDPDCVYRLLQCTWQAVPLFSRIIHSTRFVTYFCEQVLPNLSTLTTPVEGLDIQLEVLKLLAEMSSFCG |
Parental | DMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTAKLNAE |
D.EKLETNLR.LFDKL.EYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFH.LGRK.PDFLTAKLNAE | |
Retrocopy | DREKLETNLRILFDKL*EYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFH*LGRKHPDFLTAKLNAE |
Parental | KLKDFKIRLQYFARGLQVYIRQLRLALQGKTGEALKTEENKIKVVALKITNNINVLIKDLFHIPPSYKST |
KLKDFKIRLQYFARGLQ.YIRQLRLALQ.KTGEALKTEEN.IKVVALKITNNIN.LIKDLFHIPPSYKST | |
Retrocopy | KLKDFKIRLQYFARGLQIYIRQLRLALQLKTGEALKTEENEIKVVALKITNNINALIKDLFHIPPSYKST |
Parental | VTLSWKPVQKVEIGQKRASEDTTSGSPPKKSSAGPKRDARQIYNPPSGKYSSNLGNFNYEQ |
VTLSWKPVQKVEIGQKRASEDTTSGSPPKKSSAGPKRD.RQIYNPPSGKYSSNL.NFNYE. | |
Retrocopy | VTLSWKPVQKVEIGQKRASEDTTSGSPPKKSSAGPKRDTRQIYNPPSGKYSSNLSNFNYER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 22 .09 RPM |
SRP007412_cerebellum | 0 .29 RPM | 44 .45 RPM |
SRP007412_heart | 0 .12 RPM | 18 .33 RPM |
SRP007412_kidney | 0 .13 RPM | 26 .94 RPM |
SRP007412_liver | 0 .16 RPM | 19 .31 RPM |
SRP007412_testis | 0 .00 RPM | 29 .40 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4893 |
Gorilla gorilla | retro_ggor_3055 |
Pongo abelii | retro_pabe_3805 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000166181 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000002358 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000013546 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017956 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003516 | 2 retrocopies |
retro_ptro_1720, retro_ptro_3261 ,
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