>retro_ptro_56
TCGGTCGCAGCCCGCTCGGGCCCGTTCGCGCCCGTCCTGTCGGCCACGTCCCGCGGGGTGGCGGGCGCGCTGCGGCCCTT
GGTGCAGGCCACGGTGCCCGCCACCCCGGAGCAGCCTGTGTTGGACCTGAAGCGGCCCTTCCTCAGCCGGGAGTCACTGA
GCGGCCAGGCCGTGCACCGGCCTTTGGTCGCCTCCGTGGGCCTCAATGTCCCTGCTTCTGTTTGTTATTCCCACACAGAC
GTCAAGGTGCCTGACTTCTCTGAATACCGCCGCCTTGAAGTTTTAGATAGTACGAAGTCTTCAAGAGAAAGCAGCGAGGC
TAGGAAAGGTTTCTCCTATTTGGTAACTGGAGTAACTACTGTGGGTGTCGCATATGCTGCCAAGAATGCCGTCACCCAGT
TCGTTTCCAGCATGAGTGCTTCTGCTGATGTGTTGGCCCTGGCGAAAATCGAAATCAAGTTATCCGATATTCCAGAAGGC
AAGAACATGGCTTTCAAATGGAGAGGCAAACCCCTGTTTGTGCGTCATAAAACCCAGAAGGAAATTGAGCAGGAAGCTGC
AGTTGAATTATCACAGTTGAGGGACCCACAGCATGATCTAGATCGAGTAAAGAAACCTGAATGGGTTATCCTGATAGGTG
TTTGCACTCATCTTGGTTGTGTACCCATTGCAAATGCAGGAGATTTTGGTGGTTATTACTGCCCTTGCCATGGGTCACAC
TATGATGCATCTGGCAGGATCAGATTGGGTCCTGCTCCTCTCAACCTTGAAGTCCCCACGTATGAGTTCACCAGTGACGA
TATGGTGATTGTTGGTTAG
ORF - retro_ptro_56 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.06 % |
Parental protein coverage: |
99.27 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | SVAARSGPFAPVLSATSRGVAGALRPLVHITVPATPEQRVLDLKRPFFSRETLSGQAVRRPMVASVGLNV |
| SVAARSGPFAPVLSATSRGVAGALRPLV..TVPATPEQ.VLDLKRPF.SRE.LSGQAV.RP.VASVGLNV |
Retrocopy | SVAARSGPFAPVLSATSRGVAGALRPLVQATVPATPEQPVLDLKRPFLSRESLSGQAVHRPLVASVGLNV |
|
Parental | PASVCYSHTDVKVPDFSEYRRLEVLDSTKSSRESSEARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSA |
| PASVCYSHTDVKVPDFSEYRRLEVLDSTKSSRESSEARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSA |
Retrocopy | PASVCYSHTDVKVPDFSEYRRLEVLDSTKSSRESSEARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSA |
|
Parental | SADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVI |
| SADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRH.TQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVI |
Retrocopy | SADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHKTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVI |
|
Parental | LIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG |
| LIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG |
Retrocopy | LIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
4 .79 RPM |
28 .26 RPM |
SRP007412_cerebellum |
1 .08 RPM |
7 .17 RPM |
SRP007412_heart |
3 .12 RPM |
23 .67 RPM |
SRP007412_kidney |
6 .41 RPM |
33 .87 RPM |
SRP007412_liver |
3 .60 RPM |
6 .97 RPM |
SRP007412_testis |
0 .84 RPM |
8 .85 RPM |
Pan troglodytes was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ptro_56 retrocopy.
Pan troglodytes was not studied using FANTOM5 data.
retro_ptro_56 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ptro_56 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.