RetrogeneDB ID: | retro_ptro_859 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 13:28329245..28330210(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CYP51A1 | ||
Ensembl ID: | ENSPTRG00000019391 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.74 % |
Parental protein coverage: | 63.26 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | YFQSWGESGEKNVFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAWLLPGWLPLPSFR |
YFQSWGESGEKNVFEALSELIILTASHCLHGKEIRS.LNEKVAQLYADLDGGFSHAAWLLPGWLPLPSFR | |
Retrocopy | YFQSWGESGEKNVFEALSELIILTASHCLHGKEIRS*LNEKVAQLYADLDGGFSHAAWLLPGWLPLPSFR |
Parental | RRDRAHREIKDIFYKAIQKRRQSQEKIDDILQTLLDATYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSA |
.R.RAH.EIKDIFYKAIQKRRQSQEKIDDILQTLLDATYKDGRPLTDDEVAGMLIGLLLAGQH.SSTT.A | |
Retrocopy | CRERAHWEIKDIFYKAIQKRRQSQEKIDDILQTLLDATYKDGRPLTDDEVAGMLIGLLLAGQHSSSTTNA |
Parental | WMGFFLARDKTLQE-KCYLEQKTVCGENLPPLTYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTPQTV |
WM.FFLARDKTLQ..KCYLEQKTVCGENLPPLTYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTPQTV | |
Retrocopy | WMDFFLARDKTLQK<KCYLEQKTVCGENLPPLTYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTPQTV |
Parental | AGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPASGEKFAYVPFGAGRHRCIGENFAYVQIK |
.GYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPD.YLQDNPASGEKFAYVPFGAG.HR.IGENFAYVQIK | |
Retrocopy | VGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDCYLQDNPASGEKFAYVPFGAGCHR*IGENFAYVQIK |
Parental | TIWSTMLRLYEFDLIDGYFPTVNYTTMIHTPENPVIRYKRRSK |
TIWSTMLRLYEFDLIDGYFP.VNYTTMIHTPENP.I.YK.RSK | |
Retrocopy | TIWSTMLRLYEFDLIDGYFPIVNYTTMIHTPENPLIHYKQRSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .07 RPM | 19 .27 RPM |
SRP007412_cerebellum | 0 .07 RPM | 18 .18 RPM |
SRP007412_heart | 0 .06 RPM | 7 .72 RPM |
SRP007412_kidney | 0 .03 RPM | 20 .35 RPM |
SRP007412_liver | 0 .07 RPM | 33 .85 RPM |
SRP007412_testis | 0 .53 RPM | 109 .49 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1248 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005722 | 1 retrocopy | |
Homo sapiens | ENSG00000001630 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000066 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000010610 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017824 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000019391 | 2 retrocopies |
retro_ptro_1901, retro_ptro_859 ,
|
Tarsius syrichta | ENSTSYG00000014341 | 1 retrocopy |