RetrogeneDB ID:

retro_pvam_1009

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_2232:161225..161559(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CKLF
Ensembl ID:ENSPVAG00000000188
Aliases:None
Description:chemokine-like factor [Source:HGNC Symbol;Acc:13253]


Retrocopy-Parental alignment summary:






>retro_pvam_1009
TTTATCATCTCACAGCCACTGAACCATATATCATATCACTGGATTTGAAATTATTGTTATTTTCTTTTTCATAATTATAT
ATATGCAAACTTGATCAATTAATGAAATGTTTATTTAGGCCTTTACTTGATATTATCAACTCACTGGTAACAACAACATT
CATGATAATCATATCTGTGTTCACACTGATACCAGAAACCATAATATTAACAGTCCTTAGAGGGGTTTTTGAACTTGTAG
AACAGTGTGCTGTATTGCTAGGCGGGCCTTTATTCACCAGAAGTTTCTATTTAATTCAAGCGGTTCTTATCAGGAGAGTG
CTATCCATGACAAA

ORF - retro_pvam_1009 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 58.12 %
Parental protein coverage: 74.17 %
Number of stop codons detected: 0
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalFIISQ-APEPYIV-IAGFEVTVIFFFII-LYMFRLDRIINCIFWPLLDIINSVVTAIFMMTISVLALIPE
FIISQ.A.EPYI..I.GFE..VIF.F.I.LY...LD....C.F.PLLDIINS.VT..FM..ISV..LIPE
RetrocopyFIISQ<ATEPYII<ITGFEIIVIF-FFI>LYICKLDQLMKCLFRPLLDIINSLVTTTFMIIISVFTLIPE
ParentalTTFM-ILGGAFGLLV-VVCSIADAALIYRKLLFNPSGPYRKSAIHDK
T.....L.G.F.L....VC.IA..A.I..K.LFN.SG.Y..SAIHDK
RetrocopyTIILTVLRGVFELVE<TVCCIARRAFIHQKFLFNSSGSYQESAIHDK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_1009 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Pteropus vampyrus ENSPVAG00000000188 1 retrocopy
retro_pvam_1009 ,
Sarcophilus harrisii ENSSHAG000000008371 retrocopy
Tarsius syrichta ENSTSYG000000147681 retrocopy



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