RetrogeneDB ID:

retro_pvam_1475

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_9551:13695..14209(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ANKRD39
Ensembl ID:ENSPVAG00000007111
Aliases:None
Description:ankyrin repeat domain 39 [Source:HGNC Symbol;Acc:28640]


Retrocopy-Parental alignment summary:






>retro_pvam_1475
GATGGCCCCTACTGTGCCCAATCCCGTGTGGCATCCAGCGTGTGGCAGACGCTGGATGAGATGGACTTTGAAAGGGGGAT
CTGGTCGGCAGCCCTGAATGGAGACATGGGTCGAGTGAAATATTTAATTCGGAAGGCGACGGACCCTAGTCAACCTGGAC
TTGGCCAGTTGCACCACTCTGCACTATGCCAGTGTGCGTTATGCTGTATGACAGTTCCTGCTGGAAAGAGGGAGCAAGTG
TGACGCCCAGACACATGGGGGTGCCAGTGCTCTGCCCCGGGCCAGCTACTGTGGGCACACTGAGATCACATGGCTTCTGC
TGTCACTTGAGTTTAACCCCAAGCTGGTAGATAACAAGGCACAACCAGTCTACACTGCTGAGAAAGGTCATGTGAGCGTC
TGCTCCTTCCTGTTGCAACACTGCCCAGCTCTGAAGGCCTTCTGGGATTGGAAGGCACGACTAGCATATGACCTGCTACC
TTGAAGCTATGACCTGAAAGACCTGTTGGCCAGT

ORF - retro_pvam_1475 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.61 %
Parental protein coverage: 95.6 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalDGPCCAHSGAAPGARQTLDEMDFERGIWSAALNGD-GRVRYLIQKAADPSQR-DSAGYTALHYASRNGHY
DGP.CA.S..A....QTLDEMDFERGIWSAALNGD.GRV.YLI.KA.DPSQ..D.A..T.LHYAS....Y
RetrocopyDGPYCAQSRVASSVWQTLDEMDFERGIWSAALNGDMGRVKYLIRKATDPSQP>DLASCTTLHYASVR--Y
ParentalAVCQFLLENGAKCDAQTHGGATALHRASYCGHTDIARLLLSHGSNPRLVDDDGMTSLHKAAEKGHMDICS
AV.QFLLE.G.KCDAQTHGGA.AL.RASYCGHT.I..LLLS...NP.LVD..........AEKGH...CS
RetrocopyAV*QFLLERGSKCDAQTHGGASALPRASYCGHTEITWLLLSLEFNPKLVDNKAQPVY--TAEKGHVSVCS
ParentalLLLQHSPALKAVRDRKARLACDLLPCNSDLQDLLAS
.LLQH.PALKA..D.KARLA.DLLP...DL.DLLAS
RetrocopyFLLQHCPALKAFWDWKARLAYDLLP*SYDLKDLLAS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_1475 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Pteropus vampyrus ENSPVAG00000007111 1 retrocopy
retro_pvam_1475 ,



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