RetrogeneDB ID: retro_pvam_549

Retrocopy location

• Organism: Megabat (Pteropus vampyrus)
• Coordinates: GeneScaffold_3693:43085..43421(-)
• Located in intron of: ENSPVAG00000011223

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSPVAG00000024100
• Aliases: None
• Description: None

Sequence

>retro_pvam_549
ATGGTGCCCTTGCTTGCCTTGTTTCTGGTGGCCCTGCCTCTGGCCCAGGCTCTGGACTTCCATGCATGCACCTACAACAG
GGAGAATTGCTTCAACCCCATGCACTGCCCGGCCATGGTCACCTACTGCATGACCACACATACTTACTATACCCCAACCA
AGATGAAGGTGAGCAAGTCCTGCGTGCCCAGCTGCTTTGAGACCGTGTATGATGGCTACTCCAAGCACGTGTCCACCACC
TCCTGCTGCCAGTACTACCTCTGTAACGATGCCGGCCTCGCCCCTTCGAGGACCCTGGCCCTGGCTCCCAAACTCCTGGC
CATGCTCTGGGGTCTG

Alignment

ORF - retro_pvam_549 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.61 %
• Parental protein coverage: 99.14 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAPLLALFLVALPLAQALDCHVCSYNGENCFNPMRSMRCPAMVTYCMTTRTYYTPTKMKVSKSCMPSCFE
          M.PLLALFLVALPLAQALD.H.C.YN.ENCFNP...M.CPAMVTYCMTT.TYYTPTKMKVSKSC.PSCFE
Retrocopy MVPLLALFLVALPLAQALDFHACTYNRENCFNP---MHCPAMVTYCMTTHTYYTPTKMKVSKSCVPSCFE

Parental  TVYDGYSKHASTTSCCQYDLCNGAGLATPGALALAPILLATLWGL
          TVYDGYSKH.STTSCCQY.LCN.AGLA....LALAP.LLA.LWGL
Retrocopy TVYDGYSKHVSTTSCCQYYLCNDAGLAPSRTLALAPKLLAMLWGL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Pteropus vampyrus was not studied using RNA-Seq expression data.

ChIP-Seq

Pteropus vampyrus was not studied using ChIP-Seq data.

EST

Pteropus vampyrus was not studied using EST data.

TSS

Pteropus vampyrus was not studied using FANTOM5 data.

Lab

retro_pvam_549 was not experimentally validated.

Homology

Retrocopy orthology:

Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Pteropus vampyrus	ENSPVAG00000024100	1 retrocopy	retro_pvam_549 ,