RetrogeneDB ID: retro_pvam_830

Retrocopy location

• Organism: Megabat (Pteropus vampyrus)
• Coordinates: scaffold_128:233833..234186(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NUDT14
• Ensembl ID: ENSPVAG00000013910
• Aliases: None
• Description: nudix (nucleoside diphosphate linked moiety X)-type motif 14 [Source:HGNC Symbol;Acc:20141]

Sequence

>retro_pvam_830
GCCTCACTTTACCTGAGGCTCTACTGGCCGAACTGCCAGAACTGCACCCAGACATTGTGGGACTTCATGAAGACACGTGG
CAGTGTGAGCATTCTCACGTTCAATGCTTGTCAGAGGTTCTTGATGTTGGTGGAGCCATTCTGGCCAACTGCGTATGCAG
GCGAGGTGAGATGCCACTTCCCAGAGTGCCTGGAAGCCAAGAACCAGGACAGAGCTGGGAGCTGCAGGTGGCACCGCCCA
GGCGGGTGAGGGTAACAGTCAAGCTTTACATGATCCTCATAGACCAGCTTGGGCTCTTACTGGAGGAAGTGGCCGGCAAG
GAGGTTCGAGAAGAGTGTGGCTACCACCTGGCC

Alignment

ORF - retro_pvam_830 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.5 %
• Parental protein coverage: 53.6 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ASPYLRPFTLHYRQNGTQKSWDFMKTHDSVTVLLFNSSQRSLVLVKQFRPAVYASEAERNFPGCLAALDQ
          AS.YLR.......QN.TQ..WDFMKT..SV..L.FN..QR.L.LV..F.P..YA.E....FP.CL.A..Q
Retrocopy ASLYLRLYWPNC-QNCTQTLWDFMKTRGSVSILTFNACQRFLMLVEPFWPTAYAGEVRCHFPECLEAKNQ

Parental  DQPRLLPGALPGSAG-VTYELCAGLVDQPGLSLEEVACKEAREECGYDLA
          D.........PG..G.VT..L...L.DQ.GL.LEEVA.KE.REECGY.LA
Retrocopy DRAGSCRWHRPGG*G<VTVKLYMILIDQLGLLLEEVAGKEVREECGYHLA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Pteropus vampyrus was not studied using RNA-Seq expression data.

ChIP-Seq

Pteropus vampyrus was not studied using ChIP-Seq data.

EST

Pteropus vampyrus was not studied using EST data.

TSS

Pteropus vampyrus was not studied using FANTOM5 data.

Lab

retro_pvam_830 was not experimentally validated.

Homology

Retrocopy orthology:

Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Pteropus vampyrus	ENSPVAG00000013910	1 retrocopy	retro_pvam_830 ,