RetrogeneDB ID:

retro_pvam_841

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_13312:21742..22117(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MYL3
Ensembl ID:ENSPVAG00000004194
Aliases:None
Description:myosin, light chain 3, alkali; ventricular, skeletal, slow [Source:HGNC Symbol;Acc:7584]


Retrocopy-Parental alignment summary:






>retro_pvam_841
AAGATCCTGTACAGCCAGCATGGGGGTGTGATGAGGGCCCTGGGCCAGAACCCCATAAATGCCGAGGTGCTCAAGATTCT
GGGGAACTCCGAGAGTGATGAGCTAAAGTCCCAGCGTGTGGACTTCGAGTCTTTCCTGCCTGTGCTCCAGGCGGTGGCCA
AGAACCGGGATCAAGGCACATATGAGGACTACCTGCAGGGGCTTTGGGTGTTTGACGAAGAAGGGAATGGCAAAGTCATG
GGAGCAGAGCTCAGATGTGTCCTCACCGCCCTGAGAGAGAAGATGACTGAAGAGGAAGTGGAGACTGTTCTGGCAGGACA
TGAGGAGAGCAATGGTTGCATCAAGTATGAAGCCTTCCTGAAGCTCATCCTAAGC

ORF - retro_pvam_841 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 61.6 %
Parental protein coverage: 64.43 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalKITYGQCGDVLRALGQNPTQAEVLRVLGKPKQEELNTKMMDFETFLPMLQHIAKNKDTGTYEDFVEGLRV
KI.Y.Q.G.V.RALGQNP..AEVL..LG.....EL.....DFE.FLP.LQ..AKN.D.GTYED...GL.V
RetrocopyKILYSQHGGVMRALGQNPINAEVLKILGNSESDELKSQRVDFESFLPVLQAVAKNRDQGTYEDYLQGLWV
ParentalFDKEGNGTVMGAELRHVLATLGERLTEDEVEKLMAGQEDSNGCINYEAFVKHIMA
FD.EGNG.VMGAELR.VL..L.E..TE.EVE...AG.E.SNGCI.YEAF.K.I..
RetrocopyFDEEGNGKVMGAELRCVLTALREKMTEEEVETVLAGHEESNGCIKYEAFLKLILS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_841 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Danio rerio ENSDARG000000115191 retrocopy
Pteropus vampyrus ENSPVAG00000004194 1 retrocopy
retro_pvam_841 ,
Tetraodon nigroviridis ENSTNIG000000084761 retrocopy



Copyright © RetrogeneDB 2014-2017