>retro_pvam_901
CTCTTCGTCAAGGCTGGCAGTGATGGTAAAAGCCTAGGAAACTGCCCCTTTTCCCAGGCACTCTTCATGATTCTTTAGCT
CAAAGAAGTTGTATTTAGTGTTGCTACCATGGACCTGAAAAGAAAGCCTGTAGATCTGCAGAGCTTGACTACTGGGACCC
ACCCATCATTTATAACTTACAACGATGAAGTCAAAACGGATGTAAATAAGACTGAAGAATTTCTTGAAGGAGGCATATGC
CCTCCCAAGTACTTAAAAGCTTTCATCGAAATACTCAGAATTGAATAATGCTGGAATGGACATCTTTGCCAAATTTTCTG
CATATATTAAGAATTCAAGACCAGAGGCTAATGAAGCATTGGAGAGGGACCTCTTGAAAACACTACAGAAACTGGATAAA
TATCTGATTTCTCCCCTCCCTGATGAAATTGCTGAGAATAGTATGGGAAATGCTACAAGTTTTCCACACGTAAATTTCTG
GATGGTAATGAAATGACATGGCTAATTGCAACCTGCTGCCCAAACTGCACATTGTCAAGGTGGTGGCCAAAAAATATCAC
AACTTTGATATTCCAAAAGCATGACTGGCCATCTGTAGATACTTAACTAATGCTTATAGTAGGGATGAGTTCACAAATAC
CTGTCCCAGTGATAAGGAGGTTGAAATAGCGTATAGTGATGTAACCAAG
ORF - retro_pvam_901 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
60.52 % |
Parental protein coverage: |
56.37 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | LFVKAGIDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNK |
| LFVKAG.DG.S.GNCPFSQ.LFMIL.LK.VVF.V.T.DLKRKP.DL..L..GTHP.F.T.N..VKTDVNK |
Retrocopy | LFVKAGSDGKSLGNCPFSQALFMIL*LKEVVFSVATMDLKRKPVDLQSLTTGTHPSFITYNDEVKTDVNK |
|
Parental | IEEFLEETLTPEKYP-RLAAKHRGSNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALKELDDYLNTPL |
| .EEFLE....P.KY...L..K....N.AG.DIF.KFSAYIKN.....N.ALER.L.K.L..LD.YL..PL |
Retrocopy | TEEFLEGGICPPKYL>KLSSKYSELNNAGMDIFAKFSAYIKNSRPEANEALERDLLKTLQKLDKYLISPL |
|
Parental | PEEIDANTHGDDD-KRSRRKFLDGDELT-LADCNLLPKLHVVQIVSRKYRNYNFPAEMTGLWRYLKNAYA |
| P.EI..N..G....K.S.RKFLDG.E.T..A.CNLLPKLH.V..V..KY.N...P.......RYL.NAY. |
Retrocopy | PDEIAENSMGNAT<KFSTRKFLDGNEMT<MANCNLLPKLHIVKVVAKKYHNFDIPKA*LAICRYLTNAYS |
|
Parental | RDEFTNTCAADSEIELAYADVAK |
| RDEFTNTC..D.E.E.AY.DV.K |
Retrocopy | RDEFTNTCPSDKEVEIAYSDVTK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_901 was not experimentally validated.
Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.