RetrogeneDB ID:

retro_pvam_96

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_1334:64185..64651(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:DRAM2
Ensembl ID:ENSPVAG00000005429
Aliases:None
Description:DNA-damage regulated autophagy modulator 2 [Source:HGNC Symbol;Acc:28769]


Retrocopy-Parental alignment summary:






>retro_pvam_96
GTTTTATGCACTGCTACCATTTATGTTTGTTATAAGCAAGTTCATGCTCTCAATCCTGAAGGGAGTTGTATCACCAGATT
AAACAAGGATGGCCTTGTACTTGGATTGCTGAGTGGTTTATAACATTCTACTGTGGCAAACTTCCAGAAAATAATCTTTG
TTATTGTACATGTATGTGGAGTTGTGCTCACCTTTGGTGTGGGCTCATCATACATGTTTGTTTAGACCATCCTTTCCTAC
CAGACTCAGCCCAAAATGCATGGGACACGAATCCTCTGGATCAGACTTCTGGTGGTTATCTGGAGTGGAGTAAGTGCACT
TAGCATTGCTGACTCACTCATCACTTTTGCACAGTGGCAGTTTTGGCACAGATGTAGTACAGAAACTCCACTGGAACCCT
GAGAACAAAGGTTATGGGCTTCGCATAATCACTACTGCAGCAGAATGGTCTAGGTCGTCTTCCTTC

ORF - retro_pvam_96 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.64 %
Parental protein coverage: 58.27 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalVLCVATIYVRYKQVHALNPERNCIIRLNKAGLVLGLLSCLGLSLVANFQKTTFFVVHVCGAVLTFGMGSL
VLC.ATIYV.YKQVHALNPE..CI.RLNK.GLVLGLLS.L..S.VANFQK..F..VHVCG.VLTFG.GS.
RetrocopyVLCTATIYVCYKQVHALNPEGSCITRLNKDGLVLGLLSGL*HSTVANFQKIIFVIVHVCGVVLTFGVGSS
ParentalYMFVQTILSYQMQPKIHGKQVFWIRLLVVIWCGVSAFS-MLTCSSLLYSGSFGTDIVQKLHWNPKDKGYV
YMFV.TILSYQ.QPK.HG....WIRLLVVIW.GVSA.S..LT.SSLL.SGSFGTD.VQKLHWNP..KGY.
RetrocopyYMFV*TILSYQTQPKMHGTRILWIRLLVVIWSGVSALS>LLTHSSLLHSGSFGTDVVQKLHWNPENKGYG
ParentalLHMITTAAEWSMSFSF
L..ITTAAEWS.S.SF
RetrocopyLRIITTAAEWSRSSSF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_96 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species Parental gene accession Retrocopies number
Dasypus novemcinctus ENSDNOG000000170091 retrocopy
Loxodonta africana ENSLAFG000000077361 retrocopy
Myotis lucifugus ENSMLUG000000050971 retrocopy
Mustela putorius furoENSMPUG000000042321 retrocopy
Pteropus vampyrus ENSPVAG00000005429 2 retrocopies
retro_pvam_1424, retro_pvam_96 ,



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