RetrogeneDB ID: | retro_rnor_1109 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 15:53874285..53875132(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000045880 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSRNOG00000048441 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.16 % |
Parental protein coverage: | 90.1 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | NGET-VISSSDDDSIVLYDCQEGKWMMVVISCAFGLFRARDTQAAESLVFSKVKMQHTIRYLSLHDNKYI |
NGET.VISSSDDDSI.LY.CQEGK......S...G....R.T.AA...V.S..K...TI.YLSLHDNKYI | |
Retrocopy | NGET<VISSSDDDSIMLYYCQEGKPKRTLYSKKYGVELIRYTHAANTVVYSSNKIDDTICYLSLHDNKYI |
Parental | RYFPGHSKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVC-SFDPEGLIFAAGVNSE |
R.FPGHSKRVVALSMSPVDDT.ISGSLDKTI.LWDLRSPNCQGLMHLQGKP.C.SFDPEGLIFAAGVNSE | |
Retrocopy | RHFPGHSKRVVALSMSPVDDTLISGSLDKTIQLWDLRSPNCQGLMHLQGKPIC<SFDPEGLIFAAGVNSE |
Parental | MVKLYDLRSFDKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKG-VVMHTFGGYANS |
MVKLYDLRSFDKGPFATFK.QYDRTCEWTG.KFSN.GKLILISTN.SFI.LIDAFKG.VVMHT.G.YANS | |
Retrocopy | MVKLYDLRSFDKGPFATFKRQYDRTCEWTGIKFSNGGKLILISTNCSFICLIDAFKGVVVMHTYGSYANS |
Parental | KAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWL |
KAVTL..SF.PDSQFIMIG.EDGKIHVWNGESGIKVAVLDGKH.GPITCLQFNPKFM.FASACSNMAFWL | |
Retrocopy | KAVTLKSSFNPDSQFIMIG*EDGKIHVWNGESGIKVAVLDGKHSGPITCLQFNPKFMAFASACSNMAFWL |
Parental | PTIDD |
.TIDD | |
Retrocopy | RTIDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 26 .53 RPM |
SRP017611_kidney | 0 .07 RPM | 16 .96 RPM |
SRP017611_liver | 0 .00 RPM | 11 .70 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000774 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006114 | 1 retrocopy | |
Homo sapiens | ENSG00000164091 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000028309 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009280 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008234 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000011614 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000007104 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000016032 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013812 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000048441 | 3 retrocopies |
retro_rnor_1003, retro_rnor_1109 , retro_rnor_1152,
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