RetrogeneDB ID: | retro_rnor_1118 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 15:72538540..72538833(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBBP9 | ||
Ensembl ID: | ENSRNOG00000007972 | ||
Aliases: | None | ||
Description: | Putative hydrolase RBBP9 [Source:UniProtKB/Swiss-Prot;Acc:O88350] |
Percent Identity: | 60.61 % |
Parental protein coverage: | 51.61 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LPFMETELHCDEKTIIIGHSSGAIAAMRYAETHQVYALILVSAYTSDLGDENERASGYFS--RPWQWEKI |
L.FM..EL.CDE.TI...HSSG....M.Y..TH.VYA..L.SA..SD..DE.E..S.YFS...P.QWEKI | |
Retrocopy | LLFMQAELYCDENTIFVDHSSGTMVVMMYTKTH*VYAIVLMSACISDFKDESEHLSWYFSHPQPQQWEKI |
Parental | KANCPHIIQFGSTDDPF-LPWKEQQEVAD |
K...PHIIQFG..DDPF...WKEQQEVAD | |
Retrocopy | KPYLPHIIQFGFADDPF<PSWKEQQEVAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 17 .76 RPM |
SRP017611_kidney | 0 .00 RPM | 25 .96 RPM |
SRP017611_liver | 0 .00 RPM | 18 .29 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013286 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005170 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004146 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000007972 | 1 retrocopy |
retro_rnor_1118 ,
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